Schema for RNA-Seq Coverage - D. simulans RNA-Seq Read Coverage
  Database: DsimGB2    Primary Table: adultmales_rnaseqcov    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/DsimGB2/bbi/modENCODE...varchar(255) values

This table points to a file in BigWig format.

Sample Rows

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA-Seq Coverage (rnaseq_coverage) Track Description


This track was created by mapping D. simulans RNA-Seq reads (generated by the modENCODE project) against the D. simulans DsimGB2 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.


Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.