RAMPAGE TSS Read Density (Replicate 2) (R5) Track Settings
 
RAMPAGE Read Density for Different Developmental Stages (Replicate 2) (R5)   (All Expression and Regulation tracks)

Display mode:       Reset to defaults   

Type of graph:
Track height: pixels (range: 11 to 110)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 100000)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
Select subtracks by strand and stage: (help)
 All Strand Plus  Minus 
Stage
Embryos 1hr 
Embryos 2hr 
Embryos 3hr 
Embryos 4hr 
Embryos 5hr 
Embryos 6hr 
Embryos 7hr 
Embryos 8hr 
Embryos 9hr 
Embryos 10hr 
Embryos 11hr 
Embryos 12hr 
Embryos 13hr 
Embryos 14hr 
Embryos 15hr 
Embryos 16hr 
Embryos 17hr 
Embryos 18hr 
Embryos 19hr 
Embryos 20hr 
Embryos 21hr 
Embryos 22hr 
Embryos 23hr 
Stage
 All Strand Plus  Minus 
Select subtracks further by: (select multiple categories and items - help)
StageGroup:

List subtracks: only selected/visible    all    ()  
 
hide
 Configure
 Embryos, 1 hr (Rep2) (Plus)  RAMPAGE Read Density for 1 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 1 hr (Rep2) (Minus)  RAMPAGE Read Density for 1 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 2 hr (Rep2) (Plus)  RAMPAGE Read Density for 2 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 2 hr (Rep2) (Minus)  RAMPAGE Read Density for 2 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 3 hr (Rep2) (Plus)  RAMPAGE Read Density for 3 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 3 hr (Rep2) (Minus)  RAMPAGE Read Density for 3 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 4 hr (Rep2) (Plus)  RAMPAGE Read Density for 4 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 4 hr (Rep2) (Minus)  RAMPAGE Read Density for 4 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 5 hr (Rep2) (Plus)  RAMPAGE Read Density for 5 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 5 hr (Rep2) (Minus)  RAMPAGE Read Density for 5 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 6 hr (Rep2) (Plus)  RAMPAGE Read Density for 6 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 6 hr (Rep2) (Minus)  RAMPAGE Read Density for 6 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 7 hr (Rep2) (Plus)  RAMPAGE Read Density for 7 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 7 hr (Rep2) (Minus)  RAMPAGE Read Density for 7 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 8 hr (Rep2) (Plus)  RAMPAGE Read Density for 8 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 8 hr (Rep2) (Minus)  RAMPAGE Read Density for 8 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 9 hr (Rep2) (Plus)  RAMPAGE Read Density for 9 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 9 hr (Rep2) (Minus)  RAMPAGE Read Density for 9 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 10 hr (Rep2) (Plus)  RAMPAGE Read Density for 10 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 10 hr (Rep2) (Minus)  RAMPAGE Read Density for 10 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 11 hr (Rep2) (Plus)  RAMPAGE Read Density for 11 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 11 hr (Rep2) (Minus)  RAMPAGE Read Density for 11 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 12 hr (Rep2) (Plus)  RAMPAGE Read Density for 12 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 12 hr (Rep2) (Minus)  RAMPAGE Read Density for 12 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 13 hr (Rep2) (Plus)  RAMPAGE Read Density for 13 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 13 hr (Rep2) (Minus)  RAMPAGE Read Density for 13 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 14 hr (Rep2) (Plus)  RAMPAGE Read Density for 14 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 14 hr (Rep2) (Minus)  RAMPAGE Read Density for 14 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 15 hr (Rep2) (Plus)  RAMPAGE Read Density for 15 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 15 hr (Rep2) (Minus)  RAMPAGE Read Density for 15 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 16 hr (Rep2) (Plus)  RAMPAGE Read Density for 16 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 16 hr (Rep2) (Minus)  RAMPAGE Read Density for 16 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 17 hr (Rep2) (Plus)  RAMPAGE Read Density for 17 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 17 hr (Rep2) (Minus)  RAMPAGE Read Density for 17 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 18 hr (Rep2) (Plus)  RAMPAGE Read Density for 18 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 18 hr (Rep2) (Minus)  RAMPAGE Read Density for 18 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 19 hr (Rep2) (Plus)  RAMPAGE Read Density for 19 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 19 hr (Rep2) (Minus)  RAMPAGE Read Density for 19 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 20 hr (Rep2) (Plus)  RAMPAGE Read Density for 20 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 20 hr (Rep2) (Minus)  RAMPAGE Read Density for 20 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 21 hr (Rep2) (Plus)  RAMPAGE Read Density for 21 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 21 hr (Rep2) (Minus)  RAMPAGE Read Density for 21 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 22 hr (Rep2) (Plus)  RAMPAGE Read Density for 22 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 22 hr (Rep2) (Minus)  RAMPAGE Read Density for 22 hr Embryo (Replicate 2) (Minus)   Schema 
 
hide
 Configure
 Embryos, 23 hr (Rep2) (Plus)  RAMPAGE Read Density for 23 hr Embryo (Replicate 2) (Plus)   Schema 
 
hide
 Configure
 Embryos, 23 hr (Rep2) (Minus)  RAMPAGE Read Density for 23 hr Embryo (Replicate 2) (Minus)   Schema 
    

Description

These tracks show the density of RAMPAGE reads from different developmental stages of D. melanogaster embryos (biological replicate 2).

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89299. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly.

References

Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.

Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.