Description
Genomic scaffolds from each Drosophila species are aligned
against the D. yakuba genome assembly (DyakCAF1) using LAST
with default parameters. The alignments are then processed using the
UCSC whole genome alignment protocol (i.e. chaining and netting).
References
Chain/Net
Kent WJ, Baertsch R, Hinrichs A, Miller W, and Haussler D.
Evolution's cauldron: Duplication, deletion, and rearrangement
in the mouse and human genomes.
Proc Natl Acad Sci USA 2003 100(20): 11484-11489.
LAST
Kielbasa SM, Wan R, Sato K, Horton P, Frith MC.
Adaptive seeds tame genomic sequence comparison.
Genome Res. 2011 Mar;21(3):487-93.
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