Description
This track was created by mapping D. yakuba RNA-Seq reads (generated by
the modENCODE project) against the D. yakuba DyakCAF1 assembly using
HISAT2. The RNA-Seq
read coverage tracks were produced by the genomecov subprogram in
bedtools.
The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number
SRP006203.
References
Chen ZX et al. Comparative validation
of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.
Kim D, Langmead B, Salzberg SL.
HISAT: a fast spliced aligner with low memory requirements
Nat Methods. 2015 Apr;12(4):357-60.
Quinlan AR, Hall IM.
BEDTools: a flexible suite of utilities for comparing genomic features.
Bioinformatics. 2010 Mar 15;26(6):841-2.
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