RNA-Seq Coverage Track Settings
 
D. yakuba RNA-Seq Read Coverage   (All RNA Seq Tracks)

Display mode:       Reset to defaults

Type of graph:
Track height: pixels (range: 11 to 110)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 1 to 2e+06)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
List subtracks: only selected/visible    all  
full
 Configure
 Adult Females  modENCODE RNA-Seq from Adult Females   Schema 
full
 Configure
 Adult Males  modENCODE RNA-Seq from Adult Males   Schema 

Description

This track was created by mapping D. yakuba RNA-Seq reads (generated by the modENCODE project) against the D. yakuba DyakCAF1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.