Simulated Illumina reads were produced by the ART read simulator
using the D. melanogaster genome assembly. These simulated reads are then mapped against the
D. melanogaster genome assembly using bwa with the aln algorithm.
The reads for the 50bp SE Reads (10x) track were produced using the following parameters:
--fcov 10 --noALN --rndSeed 4135 --seqSys GA2 --len 50
Huang W, Li L, Myers JR, Marth GT.
ART: a next-generation sequencing read simulator.
Bioinformatics. 2012 Feb 15;28(4):593-4.
Li H, Durbin R.
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Bioinformatics. 2010 Mar 1;26(5):589-95.