This track shows the exon junctions extracted from spliced RNA-Seq reads of D. melanogaster cell lines. The RNA-Seq reads were obtained from the
ENCODE data portal at UCSC on August 2019, and then mapped against
the D. melanogaster dm6 genome assembly using
The splice junctions in each sample were identified by the
regtools junctions extract
subprogram. The splice junction predictions from the different samples are filtered
and merged together into a single set of predictions. The predictions are
color-coded based on the number of reads supporting the junction:
|Color||Number of reads|
Cherbas L, et al. The transcriptional diversity of 25 Drosophila cell lines.. Genome Res. 2011 Feb;21(2):301-14.
Kim D, Langmead B, Salzberg SL.
HISAT: a fast spliced aligner with low memory requirements.
Nat Methods. 2015 Apr;12(4):357-60.