These tracks show the nascent transcripts predicted by FStitch based on Precision Run-On and sequencing (PRO-seq) datasets for Drosophila S2 cells.
The S2_NHS_PRO_seq dataset was retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE77607.
Duarte FM, Fuda NJ, Mahat DB, Core LJ, Guertin MJ, Lis JT.
Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation. Genes Dev. 2016 Aug 1;30(15):1731-46.
Azofeifa J, Allen M, Lladser M, Dowell R.
An annotation agnostic algorithm for detecting nascent RNA transcripts in GRO-seq. IEEE/ACM Trans Comput Biol Bioinform. 2016 Jan 26.