modENCODE RNA-Seq (Cell Lines) Track Settings
 
modENCODE RNA-Seq for Different Cell Lines   (All Updated Transcriptome Tracks)

Display mode:       Reset to defaults   

Type of graph:
Track height: pixels (range: 11 to 110)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: -5e+06 to 5e+06)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
Select subtracks by strand and cellline: (help)
 All Strand Plus  Minus 
cellLine
S2-DRSC 
S2R+ 
Sg4 
1182-4H 
GM2 
Kc167 
S1 
S3 
CME L1 
CME W1 Cl.8+ 
CME W2 
ML-DmD8 
ML-DmD9 
ML-DmD16-c3 
ML-DmD21 
ML-DmD32 
ML-DmD17-c3 
ML-DmD11 
ML-DmD20-c2 
ML-DmD20-c5 
ML-DmD4-c1 
ML-DmBG1-c1 
ML-DmBG2-c2 
ML-DmBG3-c2 
mbn2 
Kc167 20E 
ML-DmBG3-c2 20E 
cellLine
 All Strand Plus  Minus 
Select subtracks further by: (select multiple categories and items - help)
TissueSource:

List subtracks: only selected/visible    all    ()  
 
hide
 Configure
 S2 (Plus)  RNA-seq for Schneider Line 2 S2-DRSC Cells (Plus)   Schema 
 
hide
 Configure
 S2 (Minus)  RNA-seq for Schneider Line 2 S2-DRSC Cells (Minus)   Schema 
 
hide
 Configure
 S2R+ (Plus)  RNA-seq for Schneider Line 2 S2R+ Cells (Plus)   Schema 
 
hide
 Configure
 S2R+ (Minus)  RNA-seq for Schneider Line 2 S2R+ Cells (Minus)   Schema 
 
hide
 Configure
 Sg4 (Plus)  RNA-seq for Schneider Line 2 Sg4 Cells (Plus)   Schema 
 
hide
 Configure
 Sg4 (Minus)  RNA-seq for Schneider Line 2 Sg4 Cells (Minus)   Schema 
 
hide
 Configure
 1182-4H (Plus)  RNA-seq for Embryonic 1182-4H Cells (Plus)   Schema 
 
hide
 Configure
 1182-4H (Minus)  RNA-seq for Embryonic 1182-4H Cells (Minus)   Schema 
 
hide
 Configure
 GM2 (Plus)  RNA-seq for Embryonic GM2 Cells (Plus)   Schema 
 
hide
 Configure
 GM2 (Minus)  RNA-seq for Embryonic GM2 Cells (Minus)   Schema 
 
hide
 Configure
 Kc167, ENCSR788YTN (Plus)  RNA-seq for Embryonic Kc167 Cells, ENCSR788YTN (Plus)   Schema 
 
hide
 Configure
 Kc167, ENCSR788YTN (Minus)  RNA-seq for Embryonic Kc167 Cells, ENCSR788YTN (Minus)   Schema 
 
hide
 Configure
 Kc167, ENCSR992GOY (Plus)  RNA-seq for Embryonic Kc167 Cells, ENCSR992GOY (Plus)   Schema 
 
hide
 Configure
 Kc167, ENCSR992GOY (Minus)  RNA-seq for Embryonic Kc167 Cells, ENCSR992GOY (Minus)   Schema 
 
hide
 Configure
 S1 (Plus)  RNA-seq for Embryonic S1 Cells (Plus)   Schema 
 
hide
 Configure
 S1 (Minus)  RNA-seq for Embryonic S1 Cells (Minus)   Schema 
 
hide
 Configure
 S3 (Plus)  RNA-seq for Embryonic S3 Cells (Plus)   Schema 
 
hide
 Configure
 S3 (Minus)  RNA-seq for Embryonic S3 Cells (Minus)   Schema 
 
hide
 Configure
 CME-L1 (Plus)  RNA-seq for Leg Disc CME-L1 Cells (Plus)   Schema 
 
hide
 Configure
 CME-L1 (Minus)  RNA-seq for Leg Disc CME-L1 Cells (Minus)   Schema 
 
hide
 Configure
 CME-W1-Cl.8+ (Plus)  RNA-seq for Wing Disc CME-W1-Cl.8+ Cells (Plus)   Schema 
 
hide
 Configure
 CME-W1-Cl.8+ (Minus)  RNA-seq for Wing Disc CME-W1-Cl.8+ Cells (Minus)   Schema 
 
hide
 Configure
 CME-W2 (Plus)  RNA-seq for Wing Disc CME-W2 Cells (Plus)   Schema 
 
hide
 Configure
 CME-W2 (Minus)  RNA-seq for Wing Disc CME-W2 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD8 (Plus)  RNA-seq for Wing Disc ML-DmD8 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD8 (Minus)  RNA-seq for Wing Disc ML-DmD8 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD9 (Plus)  RNA-seq for Wing Disc ML-DmD9 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD9 (Minus)  RNA-seq for Wing Disc ML-DmD9 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD16-c3 (Plus)  RNA-seq for Wing Disc ML-DmD16-c3 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD16-c3 (Minus)  RNA-seq for Wing Disc ML-DmD16-c3 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD21 (Plus)  RNA-seq for Wing Disc ML-DmD21 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD21 (Minus)  RNA-seq for Wing Disc ML-DmD21 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD32 (Plus)  RNA-seq for Wing Disc ML-DmD32 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD32 (Minus)  RNA-seq for Wing Disc ML-DmD32 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD17-c3 (Plus)  RNA-seq for Haltere Disc ML-DmD17-c3 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD17-c3 (Minus)  RNA-seq for Haltere Disc ML-DmD17-c3 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD11 (Plus)  RNA-seq for Eye-antennal Disc ML-DmD11 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD11 (Minus)  RNA-seq for Eye-antennal Disc ML-DmD11 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD20-c2 (Plus)  RNA-seq for Antennal Disc ML-DmD20-c2 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD20-c2 (Minus)  RNA-seq for Antennal Disc ML-DmD20-c2 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD20-c5 (Plus)  RNA-seq for Antennal Disc ML-DmD20-c5 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD20-c5 (Minus)  RNA-seq for Antennal Disc ML-DmD20-c5 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmD4-c1 (Plus)  RNA-seq for Mixed Discs ML-DmD4-c1 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmD4-c1 (Minus)  RNA-seq for Mixed Discs ML-DmD4-c1 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmBG1-c1 (Plus)  RNA-seq for CNS ML-DmBG1-c1 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmBG1-c1 (Minus)  RNA-seq for CNS ML-DmBG1-c1 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmBG2-c2 (Plus)  RNA-seq for CNS ML-DmBG2-c2 Cells (Plus)   Schema 
 
hide
 Configure
 ML-DmBG2-c2 (Minus)  RNA-seq for CNS ML-DmBG2-c2 Cells (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR286PNP (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR286PNP (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR286PNP (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR286PNP (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR359XXD (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR359XXD (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR359XXD (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR359XXD (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR792UNG (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR792UNG (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR792UNG (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR792UNG (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR934ILF (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR934ILF (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, ENCSR934ILF (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells, ENCSR934ILF (Minus)   Schema 
 
hide
 Configure
 mbn2 (Plus)  RNA-seq for Tumorous Blood Cells mbn2 (Plus)   Schema 
 
hide
 Configure
 mbn2 (Minus)  RNA-seq for Tumorous Blood Cells mbn2 (Minus)   Schema 
 
hide
 Configure
 Kc167 20E, 5hr ENCSR446OGX (Plus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR446OGX (Plus)   Schema 
 
hide
 Configure
 Kc167 20E, 5hr ENCSR446OGX (Minus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR446OGX (Minus)   Schema 
 
hide
 Configure
 Kc167 20E, 5hr ENCSR805DDP (Plus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR805DDP (Plus)   Schema 
 
hide
 Configure
 Kc167 20E, 5hr ENCSR805DDP (Minus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR805DDP (Minus)   Schema 
 
hide
 Configure
 Kc167 20E, 24hr ENCSR001HIY (Plus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR001HIY (Plus)   Schema 
 
hide
 Configure
 Kc167 20E, 24hr ENCSR001HIY (Minus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR001HIY (Minus)   Schema 
 
hide
 Configure
 Kc167 20E, 24hr ENCSR640OHN (Plus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR640OHN (Plus)   Schema 
 
hide
 Configure
 Kc167 20E, 24hr ENCSR640OHN (Minus)  RNA-seq for Embryonic Kc167 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR640OHN (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 1hr (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 1 hour (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 1hr (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 1 hour (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 3hr (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 3 hours (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 3hr (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 3 hours (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 5hr ENCSR487AIE (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR487AIE (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 5hr ENCSR487AIE (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR487AIE (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 5hr ENCSR920VFJ (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR920VFJ (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 5hr ENCSR920VFJ (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR920VFJ (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 5hr ENCSR997UBG (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR997UBG (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 5hr ENCSR997UBG (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 5 hours, ENCSR997UBG (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 7hr (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 7 hours (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 7hr (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 7 hours (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 24hr ENCSR678AJX (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR678AJX (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 24hr ENCSR678AJX (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR678AJX (Minus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 24hr ENCSR684IZZ (Plus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR684IZZ (Plus)   Schema 
 
hide
 Configure
 ML-DmBG3-c2, 20E 24hr ENCSR684IZZ (Minus)  RNA-seq for CNS ML-DmBG3-c2 Cells Treated with 20-hydroxyecdysone for 24 hours, ENCSR684IZZ (Minus)   Schema 
    

Description

These tracks show the strand-specific RNA-Seq coverage for different D. melanogaster cell lines. The RNA-Seq read coverage was normalized by a wigsum of 100,000,000 (1 million 100bp reads) using the bam2wig.py program in RSeQC.

The RNA-Seq reads were obtained from the ENCODE data portal at UCSC on August 2019, and then mapped against the D. melanogaster dm6 genome assembly using HISAT2. For each stage of development, results from multiple replicates were combined into a single RNA-Seq read coverage track.

References

Cherbas L, et al. The transcriptional diversity of 25 Drosophila cell lines.. Genome Res. 2011 Feb;21(2):301-14.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015 Apr;12(4):357-60.

Wang L, Wang S, Li W. RSeQC: quality control of RNA-seq experiments. Bioinformatics. 2012 Aug 15;28(16):2184-5.