Augustus Genes (BUSCO) Track Settings
Augustus Gene Predictions with BUSCO Training Set   (All Gene Predictions (Species-specific Parameters) tracks)

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Data last updated at UCSC: 2022-10-20


This track shows the gene models from the Augustus gene predictor using the species-specific parameters estimated from a training set produced by BUSCO.


The training set used to estimate the species-specific parameters for the Augustus analysis was produced by BUSCO using the arthropoda_odb9 dataset.

Transposons remnants identified by RepeatMasker were provided as hints to the Augustus gene predictor. The following additional parameters were used with the Augustus gene predictor:



Stanke M, Waack S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25.

Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015 Oct 1;31(19):3210-2.