GAF KD Differential Regions Track Settings
GAF vs. GAF_KD Differential Regions   (All ChIP Seq Tracks)

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 GAF Unique  Unique Binding Sites in GAF Sample   Schema 
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 Common Peaks  Common Peaks in GAF and GAF-KD Samples   Schema 


These tracks show the differential enrichment regions between the GAF and GAF-KD samples as identified by the bdgdiff program in MACS2.

The ChIP-Seq dataset was obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE40646


Fuda NJ, Guertin MJ, Sharma S, Danko CG, Martins AL, Siepel A, Lis JT. GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters. PLoS Genet. 2015 Mar 27;11(3):e1005108.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.