Combined Splice Junctions (Cell Lines) Track Settings
Combined Splice Junctions for Multiple Cell Lines   (All Updated Transcriptome Tracks)

Display mode:   

Show only items with score at or above:   (range: 0 to 1000)

View table schema
Data last updated at UCSC: 2022-10-21


This track shows the exon junctions extracted from spliced RNA-Seq reads of D. melanogaster cell lines. The RNA-Seq reads were obtained from the ENCODE data portal at UCSC on August 2019, and then mapped against the D. melanogaster dm6 genome assembly using HISAT2.

The splice junctions in each sample were identified by the regtools junctions extract subprogram. The splice junction predictions from the different samples are filtered and merged together into a single set of predictions. The predictions are color-coded based on the number of reads supporting the junction:

ColorNumber of reads
> 1000
< 10


Cherbas L, et al. The transcriptional diversity of 25 Drosophila cell lines.. Genome Res. 2011 Feb;21(2):301-14.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015 Apr;12(4):357-60.