TSRchitect RAMPAGE TSS Read Density (Replicate 1) Track Settings
 
TSRchitect RAMPAGE Read Density for Different Developmental Stages (Replicate 1)   (All Updated Transcriptome Tracks)

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Embryos 8hr 
Embryos 9hr 
Embryos 10hr 
Embryos 11hr 
Embryos 12hr 
Embryos 13hr 
Embryos 14hr 
Embryos 15hr 
Embryos 16hr 
Embryos 17hr 
Embryos 18hr 
Embryos 19hr 
Embryos 20hr 
Embryos 21hr 
Embryos 22hr 
Embryos 23hr 
Embryos 24hr 
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L3 Uncleared Gut 
L3 Partially Cleared Gut 
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 Embryos, 1 hr (Plus)  RAMPAGE Read Density for 1 hr Embryo (Plus)   Schema 
 
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 Embryos, 1 hr (Minus)  RAMPAGE Read Density for 1 hr Embryo (Minus)   Schema 
 
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 Embryos, 2 hr (Plus)  RAMPAGE Read Density for 2 hr Embryo (Plus)   Schema 
 
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 Embryos, 2 hr (Minus)  RAMPAGE Read Density for 2 hr Embryo (Minus)   Schema 
 
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 Embryos, 3 hr (Plus)  RAMPAGE Read Density for 3 hr Embryo (Plus)   Schema 
 
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 Embryos, 3 hr (Minus)  RAMPAGE Read Density for 3 hr Embryo (Minus)   Schema 
 
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 Embryos, 4 hr (Plus)  RAMPAGE Read Density for 4 hr Embryo (Plus)   Schema 
 
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 Embryos, 4 hr (Minus)  RAMPAGE Read Density for 4 hr Embryo (Minus)   Schema 
 
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 Embryos, 5 hr (Plus)  RAMPAGE Read Density for 5 hr Embryo (Plus)   Schema 
 
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 Embryos, 5 hr (Minus)  RAMPAGE Read Density for 5 hr Embryo (Minus)   Schema 
 
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 Embryos, 6 hr (Plus)  RAMPAGE Read Density for 6 hr Embryo (Plus)   Schema 
 
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 Embryos, 6 hr (Minus)  RAMPAGE Read Density for 6 hr Embryo (Minus)   Schema 
 
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 Embryos, 7 hr (Plus)  RAMPAGE Read Density for 7 hr Embryo (Plus)   Schema 
 
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 Embryos, 7 hr (Minus)  RAMPAGE Read Density for 7 hr Embryo (Minus)   Schema 
 
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 Embryos, 8 hr (Plus)  RAMPAGE Read Density for 8 hr Embryo (Plus)   Schema 
 
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 Embryos, 8 hr (Minus)  RAMPAGE Read Density for 8 hr Embryo (Minus)   Schema 
 
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 Embryos, 9 hr (Plus)  RAMPAGE Read Density for 9 hr Embryo (Plus)   Schema 
 
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 Embryos, 9 hr (Minus)  RAMPAGE Read Density for 9 hr Embryo (Minus)   Schema 
 
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 Embryos, 10 hr (Plus)  RAMPAGE Read Density for 10 hr Embryo (Plus)   Schema 
 
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 Embryos, 10 hr (Minus)  RAMPAGE Read Density for 10 hr Embryo (Minus)   Schema 
 
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 Embryos, 11 hr (Plus)  RAMPAGE Read Density for 11 hr Embryo (Plus)   Schema 
 
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 Embryos, 11 hr (Minus)  RAMPAGE Read Density for 11 hr Embryo (Minus)   Schema 
 
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 Embryos, 12 hr (Plus)  RAMPAGE Read Density for 12 hr Embryo (Plus)   Schema 
 
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 Embryos, 12 hr (Minus)  RAMPAGE Read Density for 12 hr Embryo (Minus)   Schema 
 
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 Embryos, 13 hr (Plus)  RAMPAGE Read Density for 13 hr Embryo (Plus)   Schema 
 
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 Embryos, 13 hr (Minus)  RAMPAGE Read Density for 13 hr Embryo (Minus)   Schema 
 
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 Embryos, 14 hr (Plus)  RAMPAGE Read Density for 14 hr Embryo (Plus)   Schema 
 
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 Embryos, 14 hr (Minus)  RAMPAGE Read Density for 14 hr Embryo (Minus)   Schema 
 
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 Embryos, 15 hr (Plus)  RAMPAGE Read Density for 15 hr Embryo (Plus)   Schema 
 
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 Embryos, 15 hr (Minus)  RAMPAGE Read Density for 15 hr Embryo (Minus)   Schema 
 
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 Embryos, 16 hr (Plus)  RAMPAGE Read Density for 16 hr Embryo (Plus)   Schema 
 
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 Embryos, 16 hr (Minus)  RAMPAGE Read Density for 16 hr Embryo (Minus)   Schema 
 
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 Embryos, 17 hr (Plus)  RAMPAGE Read Density for 17 hr Embryo (Plus)   Schema 
 
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 Embryos, 17 hr (Minus)  RAMPAGE Read Density for 17 hr Embryo (Minus)   Schema 
 
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 Embryos, 18 hr (Plus)  RAMPAGE Read Density for 18 hr Embryo (Plus)   Schema 
 
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 Embryos, 18 hr (Minus)  RAMPAGE Read Density for 18 hr Embryo (Minus)   Schema 
 
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 Embryos, 19 hr (Plus)  RAMPAGE Read Density for 19 hr Embryo (Plus)   Schema 
 
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 Embryos, 19 hr (Minus)  RAMPAGE Read Density for 19 hr Embryo (Minus)   Schema 
 
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 Embryos, 20 hr (Plus)  RAMPAGE Read Density for 20 hr Embryo (Plus)   Schema 
 
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 Embryos, 20 hr (Minus)  RAMPAGE Read Density for 20 hr Embryo (Minus)   Schema 
 
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 Embryos, 21 hr (Plus)  RAMPAGE Read Density for 21 hr Embryo (Plus)   Schema 
 
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 Embryos, 21 hr (Minus)  RAMPAGE Read Density for 21 hr Embryo (Minus)   Schema 
 
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 Embryos, 22 hr (Plus)  RAMPAGE Read Density for 22 hr Embryo (Plus)   Schema 
 
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 Embryos, 22 hr (Minus)  RAMPAGE Read Density for 22 hr Embryo (Minus)   Schema 
 
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 Embryos, 23 hr (Plus)  RAMPAGE Read Density for 23 hr Embryo (Plus)   Schema 
 
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 Embryos, 23 hr (Minus)  RAMPAGE Read Density for 23 hr Embryo (Minus)   Schema 
 
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 Embryos, 24 hr (Plus)  RAMPAGE Read Density for 24 hr Embryo (Plus)   Schema 
 
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 Embryos, 24 hr (Minus)  RAMPAGE Read Density for 24 hr Embryo (Minus)   Schema 
 
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 L1 (Plus)  RAMPAGE Read Density for L1 Stage Larvae (Plus)   Schema 
 
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 L1 (Minus)  RAMPAGE Read Density for L1 Stage Larvae (Minus)   Schema 
 
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 L2 (Plus)  RAMPAGE Read Density for L2 Stage Larvae (Plus)   Schema 
 
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 L2 (Minus)  RAMPAGE Read Density for L2 Stage Larvae (Minus)   Schema 
 
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 L3, Uncleared Gut (Plus)  RAMPAGE Read Density for L3 Stage Larvae, Uncleared Gut (Plus)   Schema 
 
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 L3, Uncleared Gut (Minus)  RAMPAGE Read Density for L3 Stage Larvae, Uncleared Gut (Minus)   Schema 
 
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 L3, Partially Cleared Gut (Plus)  RAMPAGE Read Density for L3 Stage Larvae, Partially Cleared Gut (Plus)   Schema 
 
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 L3, Partially Cleared Gut (Minus)  RAMPAGE Read Density for L3 Stage Larvae, Partially Cleared Gut (Minus)   Schema 
 
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 L3, Cleared Gut (Plus)  RAMPAGE Read Density for L3 Stage Larvae, Cleared Gut (Plus)   Schema 
 
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 L3, Cleared Gut (Minus)  RAMPAGE Read Density for L3 Stage Larvae, Cleared Gut (Minus)   Schema 
 
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 WPP, 1 day (Plus)  RAMPAGE Read Density for 1 day after White Prepupa (Plus)   Schema 
 
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 WPP, 1 day (Minus)  RAMPAGE Read Density for 1 day after White Prepupa (Minus)   Schema 
 
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 WPP, 2 days (Plus)  RAMPAGE Read Density for 2 days after White Prepupa (Plus)   Schema 
 
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 WPP, 2 days (Minus)  RAMPAGE Read Density for 2 days after White Prepupa (Minus)   Schema 
 
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 WPP, 3 days (Plus)  RAMPAGE Read Density for 3 days after White Prepupa (Plus)   Schema 
 
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 WPP, 3 days (Minus)  RAMPAGE Read Density for 3 days after White Prepupa (Minus)   Schema 
 
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 WPP, 4 days (Plus)  RAMPAGE Read Density for 4 days after White Prepupa (Plus)   Schema 
 
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 WPP, 4 days (Minus)  RAMPAGE Read Density for 4 days after White Prepupa (Minus)   Schema 
 
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 WPP, 5 days (Plus)  RAMPAGE Read Density for 5 days after White Prepupa (Plus)   Schema 
 
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 WPP, 5 days (Minus)  RAMPAGE Read Density for 5 days after White Prepupa (Minus)   Schema 
 
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 Adult Females, 5 days (Plus)  RAMPAGE Read Density for 5 days Adult Females (Plus)   Schema 
 
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 Adult Females, 5 days (Minus)  RAMPAGE Read Density for 5 days Adult Females (Minus)   Schema 
 
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 Adult Males, 5 days (Plus)  RAMPAGE Read Density for 5 days Adult Males (Plus)   Schema 
 
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 Adult Males, 5 days (Minus)  RAMPAGE Read Density for 5 days Adult Males (Minus)   Schema 
    

Description

These tracks show the density of RAMPAGE reads from different developmental stages of D. melanogaster embryos.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE36212. The RAMPAGE reads were mapped against the D. melanogaster (dm6) assembly using STAR.

References

Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21.

Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.