Combined Library Track Settings
Repeats Identified by the Combined Repeat Library   (All Repeats tracks)

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Data last updated at UCSC: 2015-12-14 20:09:27


This track shows the repeats identified by RepeatMasker using a combined Drosophila repeat library. The sequences in the combined repeat library were obtained from the following sources:

  • Helentrons and HINE elements from Thomas J et al., 2014
  • Species-specific ReAS repeat library from the Drosophila 12 Genomes Consortium
  • Drosophila transposons in the RepBase library
  • Species-specific LTRharvest repeat library
  • Species-specific RepeatModeler repeat library
  • Species-specific dnaPipeTE repeat library
  • Species-specific Tedna repeat library


Drosophila 12 Genomes Consortium. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450, 203-218 (8 November 2007)

Thomas J, Vadnagara K, Pritham EJ. DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons). Mob DNA. 2014 Jun 4;5:18.

Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-4.0. 2013-2015.