UCSC Genome Browser on D. kikkawai July 2022 (GEP/DkikHiC1)
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Muller_F:670,000-735,000 65,001 bp.
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-   Custom Tracks
GEP Gene Models
-   Mapping and Sequencing Tracks
Base Position
Gap
GC Percent
Assembly
CpG Islands
Restr Enzymes
Short Match
-   Genes and Gene Prediction Tracks
RefSeq Genes
D. mel Transcripts
D. mel Proteins
genBlastG Genes
GeMoMa Genes
Drosophila RefSeq Transcripts
Potential Frame Shifts
CDS Mapping
Genscan Genes
Geneid Genes
N-SCAN
N-SCAN PASA-EST
Augustus
Augustus (Protein Hints)
GlimmerHMM
tRNA Genes
rRNA Genes
BUSCO (diptera_odb10)
Pfam Conserved Domains
D. kik Mitochondria
Wolbachia Endosymbionts
-   Expression and Regulation
Combined CSHL RAMPAGE TSS
CSHL RAMPAGE TSS Read Density
-   RNA-Seq Tracks
Combined Splice Junctions
RNA-Seq Coverage (Stages)
TransDecoder Transcripts
Trinity Transcripts
-   Comparative Genomics
D. melanogaster Chain
D. melanogaster Net
D. kikkawai DkikGB2 Chain
D. kikkawai DkikGB2 Net
D. kikkawai DkikPurged1 Chain
D. kikkawai DkikPurged1 Net
-   Variation and Repeats
Interrupted Rpts
Microsatellite
Simple Repeats
WM + SDust
RepeatMasker
TE Density
TANTAN
TANTAN Tandem
RepeatModeler
TransposonPSI (Pfam)
EDTA Intact Repeats
EDTA TEanno Repeats
Octopus Variants
Inspector Small Errors
Inspector Structural Errors
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