UCSC Genome Browser on D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
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chr4:307,230-307,239 10 bp.
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-   JASPAR TFBS
JASPAR2020 TFBS dm6
JASPAR2022 TFBS dm6
-   Mapping and Sequencing Tracks
Base Position
Chromosome Band
Gap
GC Percent
Assembly
INSDC
RefSeq Acc
Restr Enzymes
Short Match
Melting Temp.
RNASlider MFE
+   Transgenic Insertions
+   Chromatin Domains
-   Genes and Gene Prediction Tracks
FlyBase Genes
FlyBase Exons
FlyBase CDS
FlyBase Pseudogenes
FlyBase Non-coding
Drosophila RefSeq Transcripts
piRNA Clusters (R5)
Pfam in RefSeq
UniProt
FlyBase 6.06 Genes
FlyBase 6.06 Proteins
FlyBase 6.06 Exons
FlyBase 6.06 CDS
FlyBase 6.06 Pseudogenes
FlyBase 6.06 Non-coding
-   ChIP Seq Tracks
Phantom Peaks (R5)
modENCODE Histones ChIP-Seq
PePr Histone Modifications Peaks
MUSIC Histone Modifications Peaks
Genome Mappability
modENCODE PolII ChIP-Seq
MUSIC PolII ChIP-Seq Peaks
PolII ChIP-Seq (Cell Lines)
RNA PolII X-ChIP-Seq
Inhibit Topoisomerases PolII ChIP-Seq
Basal Transcription Factors ChIP-Seq
GAF KD Differential Regions
Basal Transcription Factors ChIP-exo
ORGANIC Enrichment (S2 Cells)
Architectural Proteins ChIP-Seq (Kc167)
Architectural Proteins ChIP-Seq (S2)
Heat Shock Proteins ChIP-Seq (S2)
TF ChIP-nexus
ChIP-Seq MBT Embryos
CLAMP ChIP-Seq
Henriques 2018 ChIP-Seq
Zelda ChIP-Seq
Su(H) ChIP-Seq
Histone Variants ChIP-Seq (S2)
R-Loop DRIP-Seq (S2)
modENCODE Histone Modifications (R5)
modENCODE Chromosomal Proteins (R5)
modERN TF Peaks
+   ChIP-chip Tracks
+   Wolbachia Tracks
+   Expression and Regulation
-   MNase Tracks
MNase Accessibility (R5)
GAF RNAi MNase
GAF vs. LacZ RNAi MNase
NELF RNAi MNase
NELF RNAi vs. Mock MNase
MBT Embryos MNase
-   RNA Seq Tracks
FlyBase Exon Junctions
Combined modENCODE RNA-Seq (Development) (R5)
modENCODE RNA-Seq (Development) (R5)
modENCODE RNA-Seq (Cell Lines)
Aggregated RNA-Seq Coverage
-   Comparative Genomics
Drosophila Conservation (36 Species)
RefSeq Drosophila Chain/Net
Drosophila Conservation (28 Species)
Drosophila Conservation (26 Species)
PhyloP (14 Species)
PhastCons (14 Species)
Conservation (14 Species)
Drosophila Chain/Net
(dm3) D. mel. Chain
(dm3) D. mel. Net
+   Variations
-   Repeats
Natural TE
Interrupted Rpts
Microsatellite
Simple Repeats
WM + SDust
RepeatMasker
TE Density
Combined Library
TransposonPSI
TANTAN
Tallymer
RepeatDetector
Inverted Repeats
+   Updated Transcriptome Tracks
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