UCSC Genome Browser on D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
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chr4:307,271-307,277 7 bp.
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-   Polytract Repeats
Fruitfly Polytracts
-   Mapping and Sequencing Tracks
Base Position
Chromosome Band
Gap
GC Percent
Assembly
INSDC
RefSeq Acc
Restr Enzymes
Short Match
Melting Temp.
RNASlider MFE
+   Transgenic Insertions
-   Chromatin Domains
Het. Domains (R5)
BG3 9-state (R5)
S2 9-state (R5)
BG3 30-state (R5)
S2 30-state (R5)
Kc 5-state (R5)
hiHMM Models (R5)
S2 Zhou 30-state (R5)
LAD (R5)
Hi-C Domains (Embryos) (R5)
Topological Boundaries (R5)
TAD Boundaries (Nuc. Cycle 14)
HiCseg Domains (Kc167) (R5)
MARs (Embryos)
Polytene TADs (R5)
GCSDI Models (R5)
-   Genes and Gene Prediction Tracks
FlyBase Genes
FlyBase Exons
FlyBase CDS
FlyBase Pseudogenes
FlyBase Non-coding
Drosophila RefSeq Transcripts
piRNA Clusters (R5)
Pfam in RefSeq
UniProt
FlyBase 6.06 Genes
FlyBase 6.06 Proteins
FlyBase 6.06 Exons
FlyBase 6.06 CDS
FlyBase 6.06 Pseudogenes
FlyBase 6.06 Non-coding
+   ChIP Seq Tracks
+   ChIP-chip Tracks
+   Wolbachia Tracks
-   Expression and Regulation
Detected DHS Positions (Cell Lines) (R5)
DHS Read Density (Cell Lines) (R5)
Detected DHS Positions (Embryos)
DHS Read Density (Embryos)
MACS2 DHS
TSS (Embryonic) (R5)
TSS (Celniker) (R5)
Combined modENCODE CAGE TSS
modENCODE CAGE Tag Clusters
modENCODE CAGE Read Density
Combined RAMPAGE TSS (R5)
RAMPAGE TSS Read Density (R5)
Combined RAMPAGE TSS (Replicate 2) (R5)
RAMPAGE TSS Read Density (Replicate 2) (R5)
Combined MachiBase TSS
MachiBase TSS Read Density
Combined Exo-seq TSS
Exo-seq Read Density
Exo-seq Tag Clusters
MACE TSS
Exosome RNAi CAGE
Exosome RNAi CAGE Tag Clusters
PEAT (S2 Cells)
TES (Celniker) (R5)
TFBS HOT Spots (R5)
MACS STARR-seq Peaks
MACS STARR-seq Enrichment
MUSIC STARR-seq Peaks
MUSIC STARR-seq Enrichment
PePr STARR-seq Peaks
hkCP dCP STARR-Seq
Enhancers (R5)
Silencers (R5)
Insulators (R5)
Origins of Replication (R5)
SNS Origins of Replication (R5)
EPDnew Promoters
Schor 2017 CAGE Peaks (R5)
REDfly Regulatory Elements
CORE Promoters
GRO-Seq (R5)
Core LJ 2012 GRO-Seq (R5)
PRO-seq (R5)
Schaaf CA 2013 BG3 PRO-seq
Duarte FM 2016 PRO-seq
FStitch Nascent Transcripts
3'NT (S2 Cells)
CapSeq Tag Clusters
CapSeq Read Density
Start-Seq TSS (Larvae) (R5)
scRNAs (S2 Cells)
Permanganate ChIP-Seq (R5)
Embryos FAIRE-Seq
Schulz FAIRE-Seq
Embryos ATAC-Seq
3rd Instar Larvae ATAC-Seq
Eye Discs ATAC-Seq
+   MNase Tracks
+   RNA Seq Tracks
-   Comparative Genomics
Drosophila Conservation (36 Species)
RefSeq Drosophila Chain/Net
Drosophila Conservation (28 Species)
Drosophila Conservation (26 Species)
PhyloP (14 Species)
PhastCons (14 Species)
Conservation (14 Species)
Drosophila Chain/Net
(dm3) D. mel. Chain
(dm3) D. mel. Net
+   Variations
-   Repeats
Natural TE
Interrupted Rpts
Microsatellite
Simple Repeats
WM + SDust
RepeatMasker
TE Density
Combined Library
TransposonPSI
TANTAN
Tallymer
RepeatDetector
Inverted Repeats
+   Updated Transcriptome Tracks
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