UCSC Genome Browser on D. erecta May 2011 (Agencourt dere_caf1/DereCAF1)
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scaffold_4512:971,281-973,430 2,150 bp.
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-   Mapping and Sequencing Tracks
Base Position
Gap
GC Percent
Assembly
CpG Islands
INSDC
RefSeq Acc
Restr Enzymes
Short Match
-   Genes and Gene Prediction Tracks
RefSeq Genes
D. mel Transcripts
D. mel Proteins
genBlastG Genes
GeMoMa Genes
Drosophila RefSeq Transcripts
Potential Frame Shifts
CDS Mapping
Genscan Genes
Geneid Genes
Augustus
SNAP
GlimmerHMM
tRNA Genes
rRNA Genes
-   Gene Predictions (Species-specific Parameters)
Augustus Genes (BUSCO)
Geneid Genes (BUSCO)
SNAP Genes (BUSCO)
GlimmerHMM Genes (BUSCO)
-   Expression and Regulation
Combined RAMPAGE TSS
RAMPAGE TSS Read Density
TSRchitect Combined RAMPAGE TSS
TSRchitect RAMPAGE TSS Read Density
Eye Discs ATAC-Seq
-   RNA Seq Tracks
RNA-Seq Coverage
Splice Junctions
TransDecoder Transcripts
-   Comparative Genomics
Drosophila Chain/Net
D. erecta (DereRS2) Chain
D. erecta (DereRS2) Net
-   Variation and Repeats
Interrupted Rpts
Microsatellite
Simple Repeats
WM + SDust
RepeatMasker
TE Density
tantan
Tallymer
TransposonPSI (Pfam)
LTRharvest
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