modENCODE RNA-Seq from Adult Females (adultfemales

modENCODE RNA-Seq from Adult Females (adultfemales_rnaseqcov)


	Position: chr4:360,000-368,000 Total Bases in view: 8,001 Statistics on: 1,945 items covering 6,434 bases (80.41% coverage) Average item spans 3.31 bases. Minimum span 1 maximum span 87 Average value 547.837 min 1 max 1664 standard deviation 480.871 View table schema Go to RNA-Seq Coverage track controls Data last updated at UCSC: 2017-09-06 19:48:18 Description This track was created by mapping D. yakuba RNA-Seq reads (generated by the modENCODE project) against the D. yakuba DyakCAF1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203. References Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23. Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60. Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.

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