modENCODE RNA-Seq from Adult Males (adultmales_rnaseqcov)
  Position: chr4:360,000-368,000
Total Bases in view: 8,001
Statistics on: 2,266 items covering 7,041 bases (88.00% coverage)
Average item spans 3.11 bases. Minimum span 1 maximum span 101
Average value 324.505 min 1 max 1192 standard deviation 335.593
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Go to RNA-Seq Coverage track controls

Data last updated at UCSC: 2017-09-06 19:49:28

Description

This track was created by mapping D. yakuba RNA-Seq reads (generated by the modENCODE project) against the D. yakuba DyakCAF1 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.