modENCODE RNA-Seq from Adult Females (adultfemales_rnaseqcov)
  Position: CM002916:270,000-273,000
Total Bases in view: 3,001
Statistics on: 1,512 items covering 2,519 bases (83.94% coverage)
Average item spans 1.67 bases. Minimum span 1 maximum span 56
Average value 919.58 min 1 max 1802 standard deviation 514.843
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Go to RNA-Seq Coverage track controls

Data last updated at UCSC: 2017-09-06 19:45:00

Description

This track was created by mapping D. simulans RNA-Seq reads (generated by the modENCODE project) against the D. simulans DsimGB2 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.

References

Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.