Schema for RNA PolII Enrichment - Log Likelihood Ratio of RNA PolII Versus Input
  Database: DeugGB2    Primary Table: PolII_bio1_logLR    Row Count: 1   Data last updated: 2022-10-20
fieldexampleSQL type info
fileName /gbdb/DeugGB2/bbi/RNAPolII/...varchar(255) values

This table points to a file in BigWig format.

Sample Rows
 
fileName
/gbdb/DeugGB2/bbi/RNAPolII/DeugGB2_bio1_PolII_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII Enrichment (polII_logLR) Track Description
 

Description

These tracks show the log-likelihood enrichment profiles of RNA Polymerase II (over input DNA) as determined by MACS2. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the MACS2 analyses.

References

Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Credits

The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2888_4.