Schema for RNA PolII MACS Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by MACS

Database: DeugGB2 Primary Table: PolII_bio2_macs Row Count: 14,667 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFPQ02000207	`varchar(255)`	values
`chromStart`	628	`int(10) unsigned`	range
`chromEnd`	898	`int(10) unsigned`	range
`name`	DeugGB2_bio2_PolII_macs_peak_1	`varchar(255)`	values
`score`	148	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.53653	`float`	range
`pValue`	17.0939	`float`	range
`qValue`	14.8881	`float`	range
`peak`	133	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFPQ02000207	628	898	DeugGB2_bio2_PolII_macs_peak_1	148	.	2.53653	17.0939	14.8881	133
585	AFPQ02000679	11582	11844	DeugGB2_bio2_PolII_macs_peak_2	70	.	1.99915	8.94423	7.02669	149
585	AFPQ02000679	14323	14473	DeugGB2_bio2_PolII_macs_peak_3	35	.	1.62778	5.25785	3.56196	136
585	AFPQ02002236	43696	44595	DeugGB2_bio2_PolII_macs_peak_4a	454	.	3.08648	48.5609	45.4498	225
585	AFPQ02002236	43696	44595	DeugGB2_bio2_PolII_macs_peak_4b	248	.	2.73089	27.305	24.8228	782
585	AFPQ02002236	47650	47819	DeugGB2_bio2_PolII_macs_peak_5	49	.	1.71869	6.78145	4.97834	119
585	AFPQ02002236	59387	59547	DeugGB2_bio2_PolII_macs_peak_6	23	.	1.56462	3.93635	2.37886	73
585	AFPQ02002236	75245	75493	DeugGB2_bio2_PolII_macs_peak_7	38	.	1.69108	5.54633	3.82658	168
585	AFPQ02002236	76217	76549	DeugGB2_bio2_PolII_macs_peak_8	34	.	1.55442	5.12117	3.43846	81
585	AFPQ02002236	86722	87146	DeugGB2_bio2_PolII_macs_peak_9	38	.	1.67201	5.55956	3.83877	105

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII MACS Peaks (polII_macs) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by MACS2. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the MACS2 analyses. References Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2888_4.

Description