Schema for RNA PolII IDR Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by IDR

Database: DtakGB2 Primary Table: PolII_bio1_idr Row Count: 7,035 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000003	`varchar(255)`	values
`chromStart`	32297	`int(10) unsigned`	range
`chromEnd`	32655	`int(10) unsigned`	range
`name`	DtakGB2_bio1_PolII_macs_peak_1	`varchar(255)`	values
`score`	202	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.86009	`float`	range
`pValue`	23.018	`float`	range
`qValue`	20.2934	`float`	range
`peak`	225	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFI02000003	32297	32655	DtakGB2_bio1_PolII_macs_peak_1	202	.	2.86009	23.018	20.2934	225
585	AFFI02000003	38512	38831	DtakGB2_bio1_PolII_macs_peak_2	63	.	2.06911	8.53275	6.3585	210
585	AFFI02000009	21013	21439	DtakGB2_bio1_PolII_macs_peak_3	309	.	3.63625	34.1476	30.9352	141
585	AFFI02000150	15278	15491	DtakGB2_bio1_PolII_macs_peak_4	26	.	1.6651	4.63951	2.69054	98
585	AFFI02000150	39192	39438	DtakGB2_bio1_PolII_macs_peak_5	55	.	1.89294	7.73153	5.59543	90
585	AFFI02000150	41660	41859	DtakGB2_bio1_PolII_macs_peak_6	50	.	2.04451	7.17019	5.06235	82
585	AFFI02000150	57875	58480	DtakGB2_bio1_PolII_macs_peak_7	116	.	2.51804	14.0569	11.6572	422
585	AFFI02000176	3034	3378	DtakGB2_bio1_PolII_macs_peak_8	251	.	4.04417	28.0749	25.1458	151
585	AFFI02000215	8551	8747	DtakGB2_bio1_PolII_macs_peak_9	59	.	1.9636	8.11635	5.9619	99
585	AFFI02000215	9974	10261	DtakGB2_bio1_PolII_macs_peak_10	186	.	2.54152	21.2826	18.6224	142

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII IDR Peaks (polII_idr) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by MACS2. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the MACS2 analyses. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. References Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2871_6

Description