Schema for RNA PolII IDR Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by IDR

Database: DtakGB2 Primary Table: PolII_bio2_idr Row Count: 3,698 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000003	`varchar(255)`	values
`chromStart`	32396	`int(10) unsigned`	range
`chromEnd`	32622	`int(10) unsigned`	range
`name`	DtakGB2_bio2_PolII_macs_peak_1	`varchar(255)`	values
`score`	89	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.35466	`float`	range
`pValue`	11.6353	`float`	range
`qValue`	8.95756	`float`	range
`peak`	131	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFI02000003	32396	32622	DtakGB2_bio2_PolII_macs_peak_1	89	.	2.35466	11.6353	8.95756	131
585	AFFI02000003	38564	38799	DtakGB2_bio2_PolII_macs_peak_2	29	.	1.96979	5.29939	2.97002	35
585	AFFI02000009	21032	21349	DtakGB2_bio2_PolII_macs_peak_3	203	.	3.42793	23.6177	20.3603	122
585	AFFI02000150	58169	58387	DtakGB2_bio2_PolII_macs_peak_4	61	.	2.33859	8.67528	6.14321	101
585	AFFI02000176	3090	3306	DtakGB2_bio2_PolII_macs_peak_5	99	.	2.97994	12.7215	9.99235	94
585	AFFI02000215	10028	10222	DtakGB2_bio2_PolII_macs_peak_6	140	.	2.63164	17.022	14.0911	84
585	AFFI02000215	27401	27588	DtakGB2_bio2_PolII_macs_peak_7	116	.	2.65393	14.5137	11.6995	94
585	AFFI02000215	73366	73526	DtakGB2_bio2_PolII_macs_peak_8	42	.	1.75883	6.62421	4.20713	126
586	AFFI02000215	180053	180281	DtakGB2_bio2_PolII_macs_peak_9	173	.	2.90348	20.4549	17.3535	123
585	AFFI02000667	25694	25880	DtakGB2_bio2_PolII_macs_peak_10	90	.	2.70099	11.7538	9.06971	87

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII IDR Peaks (polII_idr) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by MACS2. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the MACS2 analyses. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. References Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2871_6

Description