Schema for RNA PolII MACS Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by MACS

Database: DtakGB2 Primary Table: PolII_bio1_macs Row Count: 7,035 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000003	`varchar(255)`	values
`chromStart`	32297	`int(10) unsigned`	range
`chromEnd`	32655	`int(10) unsigned`	range
`name`	DtakGB2_bio1_PolII_macs_peak_1	`varchar(255)`	values
`score`	202	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.86009	`float`	range
`pValue`	23.018	`float`	range
`qValue`	20.2934	`float`	range
`peak`	225	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFI02000003	32297	32655	DtakGB2_bio1_PolII_macs_peak_1	202	.	2.86009	23.018	20.2934	225
585	AFFI02000003	38512	38831	DtakGB2_bio1_PolII_macs_peak_2	63	.	2.06911	8.53275	6.3585	210
585	AFFI02000009	21013	21439	DtakGB2_bio1_PolII_macs_peak_3	309	.	3.63625	34.1476	30.9352	141
585	AFFI02000150	15278	15491	DtakGB2_bio1_PolII_macs_peak_4	26	.	1.6651	4.63951	2.69054	98
585	AFFI02000150	39192	39438	DtakGB2_bio1_PolII_macs_peak_5	55	.	1.89294	7.73153	5.59543	90
585	AFFI02000150	41660	41859	DtakGB2_bio1_PolII_macs_peak_6	50	.	2.04451	7.17019	5.06235	82
585	AFFI02000150	57875	58480	DtakGB2_bio1_PolII_macs_peak_7	116	.	2.51804	14.0569	11.6572	422
585	AFFI02000176	3034	3378	DtakGB2_bio1_PolII_macs_peak_8	251	.	4.04417	28.0749	25.1458	151
585	AFFI02000215	8551	8747	DtakGB2_bio1_PolII_macs_peak_9	59	.	1.9636	8.11635	5.9619	99
585	AFFI02000215	9974	10261	DtakGB2_bio1_PolII_macs_peak_10	186	.	2.54152	21.2826	18.6224	142

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII MACS Peaks (polII_macs) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by MACS2. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the MACS2 analyses. References Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2871_6

Description