Schema for RNA PolII MACS Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by MACS

Database: DtakGB2 Primary Table: PolII_bio2_macs Row Count: 3,698 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000003	`varchar(255)`	values
`chromStart`	32396	`int(10) unsigned`	range
`chromEnd`	32622	`int(10) unsigned`	range
`name`	DtakGB2_bio2_PolII_macs_peak_1	`varchar(255)`	values
`score`	89	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.35466	`float`	range
`pValue`	11.6353	`float`	range
`qValue`	8.95756	`float`	range
`peak`	131	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFI02000003	32396	32622	DtakGB2_bio2_PolII_macs_peak_1	89	.	2.35466	11.6353	8.95756	131
585	AFFI02000003	38564	38799	DtakGB2_bio2_PolII_macs_peak_2	29	.	1.96979	5.29939	2.97002	35
585	AFFI02000009	21032	21349	DtakGB2_bio2_PolII_macs_peak_3	203	.	3.42793	23.6177	20.3603	122
585	AFFI02000150	58169	58387	DtakGB2_bio2_PolII_macs_peak_4	61	.	2.33859	8.67528	6.14321	101
585	AFFI02000176	3090	3306	DtakGB2_bio2_PolII_macs_peak_5	99	.	2.97994	12.7215	9.99235	94
585	AFFI02000215	10028	10222	DtakGB2_bio2_PolII_macs_peak_6	140	.	2.63164	17.022	14.0911	84
585	AFFI02000215	27401	27588	DtakGB2_bio2_PolII_macs_peak_7	116	.	2.65393	14.5137	11.6995	94
585	AFFI02000215	73366	73526	DtakGB2_bio2_PolII_macs_peak_8	42	.	1.75883	6.62421	4.20713	126
586	AFFI02000215	180053	180281	DtakGB2_bio2_PolII_macs_peak_9	173	.	2.90348	20.4549	17.3535	123
585	AFFI02000667	25694	25880	DtakGB2_bio2_PolII_macs_peak_10	90	.	2.70099	11.7538	9.06971	87

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII MACS Peaks (polII_macs) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by MACS2. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the MACS2 analyses. References Zhang Y et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2871_6

Description