Schema for RNA PolII Peakzilla Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by peakzilla

Database: DtakGB2 Primary Table: PolII_bio2_peakzilla Row Count: 5,064 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000003	`varchar(255)`	values
`chromStart`	32383	`int(10) unsigned`	range
`chromEnd`	32681	`int(10) unsigned`	range
`name`	peakzilla_2285	`varchar(255)`	values
`score`	4	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	3.44	`float`	range
`pValue`	-1	`float`	range
`qValue`	2.24413	`float`	range
`peak`	149	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFI02000003	32383	32681	peakzilla_2285	4	.	3.44	-1	2.24413	149
585	AFFI02000003	38421	38719	peakzilla_4941	1	.	2.18	-1	1.3536	149
585	AFFI02000009	21015	21313	peakzilla_555	11	.	11.77	-1	1.84771	149
585	AFFI02000150	58128	58426	peakzilla_4104	2	.	2.42	-1	1.80688	149
585	AFFI02000176	3051	3349	peakzilla_4142	2	.	2.77	-1	1.80967	149
585	AFFI02000215	8504	8802	peakzilla_3694	2	.	2.11	-1	2.02687	149
585	AFFI02000215	9974	10272	peakzilla_1564	5	.	3.94	-1	2.11919	149
585	AFFI02000215	27343	27641	peakzilla_1053	7	.	6.47	-1	1.98716	149
585	AFFI02000215	73332	73630	peakzilla_2204	4	.	2.62	-1	2.22915	149
586	AFFI02000215	180038	180336	peakzilla_1018	8	.	7.4	-1	1.97062	149

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII Peakzilla Peaks (polII_peakzilla) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by Peakzilla. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the Peakzilla analyses. References Bardet AF, Steinmann J, Bafna S, Knoblich JA, Zeitlinger J, Stark A. Identification of transcription factor binding sites from ChIP-seq data at high resolution. Bioinformatics. 2013 Nov 1;29(21):2705-13. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2871_6

Description