RNA-Seq Coverage Track Settings

D. suzukii RNA-Seq Coverage (All RNA Seq Tracks)

Display mode: Reset to defaults

Type of graph:
Track height:	pixels (range: 11 to 110)
Data view scaling:	Always include zero:
Vertical viewing range:	min:	max: (range: 1 to 5e+06)
Transform function:	Transform data points by:
Windowing function:		Smoothing window:	pixels
Negate values:
Draw y indicator lines:	at y = 0.0: at y =

Graph configuration help

List subtracks: only selected/visible all
	full Configure	Adult Females	RNA-Seq from D. suzukii Adult Females	Schema
	full Configure	Adult Males	RNA-Seq from D. suzukii Adult Males	Schema

Description

This track was created by mapping D. suzukii RNA-Seq reads (generated by the Spotted Wing Drosophila Genome Project) against the D. suzukii DsuzGB1 assembly using Bowtie2 and TopHat. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the BioProject accession number PRJNA221549.

References

Chiu JC et al. Genome of Drosophila suzukii, the spotted wing drosophila. G3 (Bethesda). 2013 Dec 9;3(12):2257-71.

Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11.