RAMPAGE TSS Read Density Track Settings
 
RAMPAGE Read Density for Different Developmental Stages   (All Expression and Regulation tracks)

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Track height: pixels (range: 11 to 110)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 100000)
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Select subtracks by strand and stage: (help)
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Embryos 15hr 
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 Embryos, 1 hr (Plus)  RAMPAGE Read Density for 1 hr Embryo (Plus)   Schema 
 
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 Embryos, 1 hr (Minus)  RAMPAGE Read Density for 1 hr Embryo (Minus)   Schema 
 
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 Embryos, 2 hr (Plus)  RAMPAGE Read Density for 2 hr Embryo (Plus)   Schema 
 
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 Embryos, 2 hr (Minus)  RAMPAGE Read Density for 2 hr Embryo (Minus)   Schema 
 
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 Embryos, 3 hr (Plus)  RAMPAGE Read Density for 3 hr Embryo (Plus)   Schema 
 
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 Embryos, 3 hr (Minus)  RAMPAGE Read Density for 3 hr Embryo (Minus)   Schema 
 
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 Embryos, 4 hr (Plus)  RAMPAGE Read Density for 4 hr Embryo (Plus)   Schema 
 
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 Embryos, 4 hr (Minus)  RAMPAGE Read Density for 4 hr Embryo (Minus)   Schema 
 
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 Embryos, 5 hr (Plus)  RAMPAGE Read Density for 5 hr Embryo (Plus)   Schema 
 
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 Embryos, 5 hr (Minus)  RAMPAGE Read Density for 5 hr Embryo (Minus)   Schema 
 
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 Embryos, 6 hr (Plus)  RAMPAGE Read Density for 6 hr Embryo (Plus)   Schema 
 
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 Embryos, 6 hr (Minus)  RAMPAGE Read Density for 6 hr Embryo (Minus)   Schema 
 
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 Embryos, 7 hr (Plus)  RAMPAGE Read Density for 7 hr Embryo (Plus)   Schema 
 
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 Embryos, 7 hr (Minus)  RAMPAGE Read Density for 7 hr Embryo (Minus)   Schema 
 
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 Embryos, 8 hr (Plus)  RAMPAGE Read Density for 8 hr Embryo (Plus)   Schema 
 
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 Embryos, 8 hr (Minus)  RAMPAGE Read Density for 8 hr Embryo (Minus)   Schema 
 
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 Embryos, 9 hr (Plus)  RAMPAGE Read Density for 9 hr Embryo (Plus)   Schema 
 
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 Embryos, 9 hr (Minus)  RAMPAGE Read Density for 9 hr Embryo (Minus)   Schema 
 
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 Embryos, 10 hr (Plus)  RAMPAGE Read Density for 10 hr Embryo (Plus)   Schema 
 
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 Embryos, 10 hr (Minus)  RAMPAGE Read Density for 10 hr Embryo (Minus)   Schema 
 
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 Embryos, 11 hr (Plus)  RAMPAGE Read Density for 11 hr Embryo (Plus)   Schema 
 
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 Embryos, 11 hr (Minus)  RAMPAGE Read Density for 11 hr Embryo (Minus)   Schema 
 
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 Embryos, 12 hr (Plus)  RAMPAGE Read Density for 12 hr Embryo (Plus)   Schema 
 
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 Embryos, 12 hr (Minus)  RAMPAGE Read Density for 12 hr Embryo (Minus)   Schema 
 
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 Embryos, 13 hr (Plus)  RAMPAGE Read Density for 13 hr Embryo (Plus)   Schema 
 
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 Embryos, 13 hr (Minus)  RAMPAGE Read Density for 13 hr Embryo (Minus)   Schema 
 
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 Embryos, 14 hr (Plus)  RAMPAGE Read Density for 14 hr Embryo (Plus)   Schema 
 
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 Embryos, 14 hr (Minus)  RAMPAGE Read Density for 14 hr Embryo (Minus)   Schema 
 
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 Embryos, 15 hr (Plus)  RAMPAGE Read Density for 15 hr Embryo (Plus)   Schema 
 
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 Embryos, 15 hr (Minus)  RAMPAGE Read Density for 15 hr Embryo (Minus)   Schema 
 
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 Embryos, 16 hr (Plus)  RAMPAGE Read Density for 16 hr Embryo (Plus)   Schema 
 
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 Embryos, 16 hr (Minus)  RAMPAGE Read Density for 16 hr Embryo (Minus)   Schema 
 
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 Embryos, 17 hr (Plus)  RAMPAGE Read Density for 17 hr Embryo (Plus)   Schema 
 
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 Embryos, 17 hr (Minus)  RAMPAGE Read Density for 17 hr Embryo (Minus)   Schema 
 
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 Embryos, 18 hr (Plus)  RAMPAGE Read Density for 18 hr Embryo (Plus)   Schema 
 
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 Embryos, 18 hr (Minus)  RAMPAGE Read Density for 18 hr Embryo (Minus)   Schema 
 
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 Embryos, 19 hr (Plus)  RAMPAGE Read Density for 19 hr Embryo (Plus)   Schema 
 
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 Embryos, 19 hr (Minus)  RAMPAGE Read Density for 19 hr Embryo (Minus)   Schema 
 
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 Embryos, 20 hr (Plus)  RAMPAGE Read Density for 20 hr Embryo (Plus)   Schema 
 
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 Embryos, 20 hr (Minus)  RAMPAGE Read Density for 20 hr Embryo (Minus)   Schema 
 
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 Embryos, 21 hr (Plus)  RAMPAGE Read Density for 21 hr Embryo (Plus)   Schema 
 
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 Embryos, 21 hr (Minus)  RAMPAGE Read Density for 21 hr Embryo (Minus)   Schema 
 
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 Embryos, 22 hr (Plus)  RAMPAGE Read Density for 22 hr Embryo (Plus)   Schema 
 
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 Embryos, 22 hr (Minus)  RAMPAGE Read Density for 22 hr Embryo (Minus)   Schema 
 
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 Embryos, 23 hr (Plus)  RAMPAGE Read Density for 23 hr Embryo (Plus)   Schema 
 
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 Embryos, 23 hr (Minus)  RAMPAGE Read Density for 23 hr Embryo (Minus)   Schema 
    

Description

These tracks show the density of RAMPAGE reads from different developmental stages of D. erecta embryos.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE89304.

References

Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. Elife. 2017 Dec 20;6.

Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Res. 2013 Jan;23(1):169-80.