Schema for GC Percent - GC Percent in 5-Base Windows

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for GC Percent - GC Percent in 5-Base Windows

Database: DereCAF1 Primary Table: gc5Base Row Count: 31,879 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_0	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	2805	`int(10) unsigned`	range
`name`	scaffold_0.3239	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	561	`int(10) unsigned`	range
`offset`	920889	`int(10) unsigned`	range
`file`	/gbdb/DereCAF1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	561	`int(10) unsigned`	range
`sumData`	17000	`double`	range
`sumSquares`	765600	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	scaffold_0	0	2805	scaffold_0.3239	5	561	920889	/gbdb/DereCAF1/wib/gc5Base.wib	0	100	561	17000	765600
585	scaffold_1	0	1465	scaffold_1.2051	5	293	468878	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	293	8500	367600
585	scaffold_10	0	2405	scaffold_10.3078	5	481	837452	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	481	14780	650000
585	scaffold_100	0	2770	scaffold_100.3225	5	554	913083	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	358	10250	433700
585	scaffold_1000	0	1075	scaffold_1000.666	5	215	121286	/gbdb/DereCAF1/wib/gc5Base.wib	0	100	215	7860	410000
585	scaffold_1001	0	895	scaffold_1001.236	5	179	34594	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	179	5660	266000
585	scaffold_1002	0	1310	scaffold_1002.1567	5	262	335223	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	262	8800	427200
585	scaffold_1003	0	865	scaffold_1003.204	5	173	28963	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	173	5680	268800
585	scaffold_1004	0	1275	scaffold_1004.1450	5	255	305013	/gbdb/DereCAF1/wib/gc5Base.wib	0	100	255	9320	469600
585	scaffold_1005	0	1660	scaffold_1005.2463	5	332	597033	/gbdb/DereCAF1/wib/gc5Base.wib	0	80	332	11460	559600

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.