Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DereCAF1 Primary Table: tallymer Data last updated: 2017-08-06
Big Bed File: /gbdb/DereCAF1/bbi/DereCAF1.tallymer.bb
Item Count: 123,927
Format description: Browser Extensible Data

field	example	description
`chrom`	scaffold_0	Reference sequence chromosome or scaffold
`chromStart`	0	Start position in chromosome
`chromEnd`	276	End position in chromosome
`name`	tallymer_5870	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
scaffold_0	0	276	tallymer_5870
scaffold_0	277	846	tallymer_5871
scaffold_0	847	1752	tallymer_5872
scaffold_0	1753	2179	tallymer_5873
scaffold_0	2180	2354	tallymer_5874
scaffold_0	2355	2547	tallymer_5875
scaffold_0	2548	2805	tallymer_5876

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. erecta genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References