Schema for TransDecoder Transcripts - Transcripts and Coding Regions Predicted by TransDecoder
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Database: DgriCAF1 Primary Table: transdecoder Row Count: 15,979   Data last updated: 2022-10-20
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
name | DgriCAF1_stringtie.1.1_m.1 | varchar(255) | values |
chrom | scaffold_10027 | varchar(255) | values |
strand | + | char(1) | values |
txStart | 57 | int(10) unsigned | range |
txEnd | 1201 | int(10) unsigned | range |
cdsStart | 158 | int(10) unsigned | range |
cdsEnd | 1199 | int(10) unsigned | range |
exonCount | 5 | int(10) unsigned | range |
exonStarts | 57,485,625,806,1164, | longblob | |
exonEnds | 421,560,725,894,1201, | longblob | |
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Sample Rows
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bin | name | chrom | strand | txStart | txEnd | cdsStart | cdsEnd | exonCount | exonStarts | exonEnds |
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585 | DgriCAF1_stringtie.1.1_m.1 | scaffold_10027 | + | 57 | 1201 | 158 | 1199 | 5 | 57,485,625,806,1164, | 421,560,725,894,1201, |
585 | DgriCAF1_stringtie.2.1_m.3 | scaffold_10030 | + | 5678 | 8619 | 5678 | 8617 | 4 | 5678,6750,7208,8379, | 5698,7123,7387,8619, |
585 | DgriCAF1_stringtie.2.2_m.2 | scaffold_10030 | + | 7208 | 22595 | 7208 | 22528 | 13 | 7208,8841,9210,15139,15405,15754,16569,16833,17107,17394,21755,22255,22432, | 7387,9139,9312,15348,15569,15881,16775,17051,17332,17619,21913,22373,22595, |
585 | DgriCAF1_stringtie.7.1_m.4 | scaffold_10033 | + | 1217 | 1809 | 1219 | 1783 | 2 | 1217,1312, | 1255,1809, |
585 | DgriCAF1_stringtie.8.1_m.6 | scaffold_10058 | + | 0 | 838 | 0 | 728 | 2 | 0,166, | 101,838, |
585 | DgriCAF1_stringtie.10.1_m.9 | scaffold_10092 | - | 1051 | 5499 | 1165 | 5499 | 5 | 1051,1484,1838,5064,5280, | 1409,1773,2049,5211,5499, |
585 | DgriCAF1_stringtie.11.1_m.8 | scaffold_10092 | + | 2312 | 4854 | 2312 | 4686 | 3 | 2312,4404,4620, | 3766,4552,4854, |
585 | DgriCAF1_stringtie.15.1_m.10 | scaffold_10156 | + | 2864 | 4971 | 2865 | 4971 | 5 | 2864,3525,4132,4382,4688, | 3464,3822,4319,4630,4971, |
585 | DgriCAF1_stringtie.16.1_m.11 | scaffold_10473 | - | 3 | 797 | 4 | 796 | 2 | 3,190, | 52,797, |
585 | DgriCAF1_stringtie.20.8_m.14 | scaffold_10844 | - | 13 | 1227 | 14 | 1226 | 3 | 13,499,1060, | 193,856,1227, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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TransDecoder Transcripts (transdecoder) Track Description
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