Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DgriCAF1 Primary Table: microsat Row Count: 3,182 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	scaffold_1	`varchar(255)`	values
`chromStart`	255	`int(10) unsigned`	range
`chromEnd`	324	`int(10) unsigned`	range
`name`	34xCA	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	scaffold_1	255	324	34xCA
585	scaffold_10037	18068	18108	20xAT
585	scaffold_10042	1626	1656	15xCA
585	scaffold_10085	1661	1691	15xCA
585	scaffold_10099	937	968	15xTG
585	scaffold_10121	34	64	15xCA
585	scaffold_10121	757	792	17xCA
585	scaffold_10121	2205	2236	15xCA
585	scaffold_10122	100	134	17xCA
585	scaffold_10122	826	880	27xCA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217

Description