Schema for Tallymer - Repetitive Regions Identified by Tallymer

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Database: DgriCAF1 Primary Table: tallymer Data last updated: 2018-02-23
Big Bed File: /gbdb/DgriCAF1/bbi/DgriCAF1.tallymer.bb
Item Count: 148,447
Format description: Browser Extensible Data

field	example	description
`chrom`	scaffold_0	Reference sequence chromosome or scaffold
`chromStart`	59	Start position in chromosome
`chromEnd`	366	End position in chromosome
`name`	tallymer_18694	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
scaffold_0	59	366	tallymer_18694
scaffold_0	424	619	tallymer_18696
scaffold_0	620	675	tallymer_18697
scaffold_0	676	1224	tallymer_18698
scaffold_0	1225	1464	tallymer_18699
scaffold_0	1465	1702	tallymer_18700
scaffold_0	1745	1824	tallymer_18702
scaffold_0	1841	2078	tallymer_18703
scaffold_0	2079	2144	tallymer_18704
scaffold_0	2174	2345	tallymer_18706

Tallymer (tallymer) Track Description


	Description This evidence track shows the tallymer analysis of the D. grimshawi genome. References The Tallymer software is available as part of the GenomeTools package. Kurtz S., Narechania A., Stein J.C., Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. BMC Genomics 2008, 9:517.

Description

References