Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DmirGB2 Primary Table: gc5Base Row Count: 26,574 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	CM001516	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	CM001516.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/DmirGB2/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1023	`int(10) unsigned`	range
`sumData`	44975	`double`	range
`sumSquares`	2534020	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	CM001516	0	5120	CM001516.0	5	1024	0	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1023	44975	2534020
585	CM001516	5120	8285	CM001516.1	5	633	1024	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	632	23745	1239720
585	CM001516	10775	15895	CM001516.2	5	1024	1657	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1024	39880	2158400
585	CM001516	15895	21015	CM001516.3	5	1024	2681	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1024	57420	3728400
585	CM001516	21015	26135	CM001516.4	5	1024	3705	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1024	55820	3534800
585	CM001516	26135	31255	CM001516.5	5	1024	4729	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1024	51440	3135200
585	CM001516	31255	36375	CM001516.6	5	1024	5753	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1023	43585	2478220
585	CM001516	36375	41495	CM001516.7	5	1024	6777	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	813	35095	1967620
585	CM001516	41495	46615	CM001516.8	5	1024	7801	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1024	50740	3108400
585	CM001516	46615	51735	CM001516.9	5	1024	8825	/gbdb/DmirGB2/wib/gc5Base.wib	0	100	1024	48640	2901600

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.