Schema for Microsatellite - Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

Database: DmirGB2 Primary Table: microsat Row Count: 1,199 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	CM001516	`varchar(255)`	values
`chromStart`	54136	`int(10) unsigned`	range
`chromEnd`	54170	`int(10) unsigned`	range
`name`	17xTG	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	CM001516	54136	54170	17xTG
585	CM001516	107210	107262	26xCA
585	CM001516	110265	110307	21xGT
585	CM001516	117132	117169	18xAG
586	CM001516	166312	166348	18xAG
586	CM001516	249705	249761	28xTC
587	CM001516	290770	290828	29xCA
587	CM001516	335142	335174	16xAT
590	CM001516	752665	752713	24xAT
590	CM001516	779768	779815	23xAG

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Microsatellite (microsat) Track Description


	Description This track displays regions that are likely to be useful as microsatellite markers. These are sequences of at least 15 perfect di-nucleotide and tri-nucleotide repeats and tend to be highly polymorphic in the population. Methods The data shown in this track are a subset of the Simple Repeats track, selecting only those repeats of period 2 and 3, with 100% identity and no indels and with at least 15 copies of the repeat. The Simple Repeats track is created using the Tandem Repeats Finder. For more information about this program, see Benson (1999). Credits Tandem Repeats Finder was written by Gary Benson. References Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217

Description