Schema for Repfind Repeats - Repeats Identified by Repfind

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Database: DmojImproved Primary Table: repfind Row Count: 70,171

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	improved_6498	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	527	`int(10) unsigned`	range

Sample Rows

bin	chrom	chromStart	chromEnd
585	improved_6498	0	527
585	improved_6498	528	1110
585	improved_6498	1234	1728
585	improved_6498	1729	1836
585	improved_6498	1837	1957
585	improved_6498	1958	3084
585	improved_6498	3165	3761
585	improved_6498	3910	4190
585	improved_6498	4207	4347
585	improved_6498	4466	4579

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Repfind Repeats (repfind) Track Description


	Description Repetitive sequences with a minimum size of 100 were identified using the RepFind tool in the GenomeTools package. References Gordon Gremme, Sascha Steinbiss, Stefan Kurtz, et al. GenomeTools.

Description