Schema for WindowMasker - Repetitive Regions Identified by WindowMasker

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Database: DmojImproved Primary Table: windowmasker Data last updated: 2013-05-26
Big Bed File: /gbdb/DmojImproved/bbi/windowmasker.bb
Item Count: 1,199,614
Format description: Browser Extensible Data

field	example	description
`chrom`	improved_6498	Reference sequence chromosome or scaffold
`chromStart`	2271045	Start position in chromosome
`chromEnd`	2271115	End position in chromosome
`name`	wm_12178	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
improved_6498	2271045	2271115	wm_12178
improved_6498	2271155	2272070	wm_12179
improved_6498	2272110	2272240	wm_12180
improved_6498	2272343	2272415	wm_12181
improved_6498	2272490	2272586	wm_12182
improved_6498	2272596	2272620	wm_12183
improved_6498	2272649	2272667	wm_12184
improved_6498	2272672	2272876	wm_12185
improved_6498	2272904	2272945	wm_12186
improved_6498	2273009	2273041	wm_12187

WindowMasker (windowmasker) Track Description


	Description This track depicts masked sequence as determined by WindowMasker. The WindowMasker tool is included in the NCBI C++ toolkit. The source code for the entire toolkit is available from the NCBI FTP site. References Morgulis A, Gertz EM, SchŠffer AA, Agarwala R. WindowMasker: window-based masker for sequenced genomes. Bioinformatics. 2006 Jan 15;22(2):134-41.

Description

References