Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: DsuzGB1 Primary Table: gc5Base Row Count: 49,082

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AWUT01012676	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	AWUT01012676.33244	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	28340242	`int(10) unsigned`	range
`file`	/gbdb/DsuzGB1/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	37780	`double`	range
`sumSquares`	1906800	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	AWUT01012676	0	5120	AWUT01012676.33244	5	1024	28340242	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	37780	1906800
585	AWUT01012676	5120	10240	AWUT01012676.33245	5	1024	28341266	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	38420	1980400
585	AWUT01012676	10240	15360	AWUT01012676.33246	5	1024	28342290	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	34760	1701600
585	AWUT01012676	15360	20480	AWUT01012676.33247	5	1024	28343314	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	46560	2680800
585	AWUT01012676	20480	25600	AWUT01012676.33248	5	1024	28344338	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	39280	2062400
585	AWUT01012676	25600	30720	AWUT01012676.33249	5	1024	28345362	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	45120	2516800
585	AWUT01012676	30720	35840	AWUT01012676.33250	5	1024	28346386	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	38860	1994000
585	AWUT01012676	35840	40960	AWUT01012676.33251	5	1024	28347410	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	39320	2013600
585	AWUT01012676	40960	46080	AWUT01012676.33252	5	1024	28348434	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	39800	2156000
585	AWUT01012676	46080	51200	AWUT01012676.33253	5	1024	28349458	/gbdb/DsuzGB1/wib/gc5Base.wib	0	100	1024	44940	2455600

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.