Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

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Schema for MAKER Predictions - MAKER Gene Predictions Produced by BCM

Database: DtakGB2 Primary Table: BCM_maker Row Count: 13,680

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`name`	DTAK012404-RA	`varchar(255)`	values
`chrom`	AFFI02000003	`varchar(255)`	values
`strand`	-	`char(1)`	values
`txStart`	1773	`int(10) unsigned`	range
`txEnd`	3276	`int(10) unsigned`	range
`cdsStart`	1776	`int(10) unsigned`	range
`cdsEnd`	3276	`int(10) unsigned`	range
`exonCount`	1	`int(10) unsigned`	range
`exonStarts`	1773,	`longblob`
`exonEnds`	3276,	`longblob`

Sample Rows

bin	name	chrom	strand	txStart	txEnd	cdsStart	cdsEnd	exonCount	exonStarts	exonEnds
585	DTAK012404-RA	AFFI02000003	-	1773	3276	1776	3276	1	1773,	3276,
585	DTAK012405-RA	AFFI02000003	-	10545	12388	10548	12388	2	10545,12350,	11350,12388,
585	DTAK012406-RA	AFFI02000003	+	38494	42336	39357	42336	4	38494,39349,39950,41906,	39141,39896,41804,42336,
585	DTAK012893-RA	AFFI02000004	-	766	7647	766	7643	3	766,1120,7268,	1112,1578,7647,
585	DTAK012595-RA	AFFI02000009	+	5633	25626	5633	17117	13	5633,10222,11516,15454,16065,18383,19046,20060,20690,21204,24069,24284,25295,	5756,11046,12293,15708,18043,18780,19983,20377,21203,21321,24204,24644,25626,
585	DTAK012596-RA	AFFI02000009	-	26034	26340	26037	26340	1	26034,	26340,
585	DTAK012744-RA	AFFI02000021	-	5115	8387	5218	8384	5	5115,6380,6947,7456,8152,	6318,6533,7367,7795,8387,
585	DTAK012745-RA	AFFI02000021	+	9141	17030	10218	16396	2	9141,15925,	11106,17030,
585	DTAK012746-RA	AFFI02000021	-	11979	13742	11982	13742	2	11979,13520,	12114,13742,
585	DTAK012747-RA	AFFI02000021	+	20798	21525	20804	21522	3	20798,21018,21477,	20972,21126,21525,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

MAKER Predictions (BCM_maker) Track Description


	Description This track shows the MAKER annotations produced by the Baylor College of Medicine Human Genome Sequencing Center (BCM-HGSC) as part of the modENCODE project. The MAKER annotations are available for download through the BCM-HGSC FTP site. The MAKER annotations are lifted from the original version 2 assembly onto the current GenBank assembly using BLAT. References Holt C, Yandell M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics. 2011 Dec 22;12:491. Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.