Schema for RNA PolII Peakzilla Peaks - RNA Polymerase II ChIP-Seq Peaks Identified by peakzilla

Database: DtakGB2 Primary Table: PolII_bio1_peakzilla Row Count: 7,182 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	AFFI02000003	`varchar(255)`	values
`chromStart`	32363	`int(10) unsigned`	range
`chromEnd`	32683	`int(10) unsigned`	range
`name`	peakzilla_2384	`varchar(255)`	values
`score`	7	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	4.3	`float`	range
`pValue`	-1	`float`	range
`qValue`	2.26761	`float`	range
`peak`	160	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	AFFI02000003	32363	32683	peakzilla_2384	7	.	4.3	-1	2.26761	160
585	AFFI02000003	38585	38905	peakzilla_5025	3	.	2.72	-1	2.18709	160
585	AFFI02000009	21009	21329	peakzilla_444	21	.	13.28	-1	1.87615	160
585	AFFI02000150	15211	15531	peakzilla_5439	2	.	2.36	-1	2.10791	160
585	AFFI02000150	39135	39455	peakzilla_4508	3	.	2.45	-1	2.24413	160
585	AFFI02000150	58171	58491	peakzilla_4506	3	.	3.07	-1	2.24413	160
585	AFFI02000176	3026	3346	peakzilla_3201	5	.	8.11	-1	2.3279	160
585	AFFI02000215	8484	8804	peakzilla_3564	4	.	3.15	-1	2.34679	160
585	AFFI02000215	9948	10268	peakzilla_1480	10	.	4.9	-1	2.17393	160
585	AFFI02000215	26793	27113	peakzilla_5142	3	.	3.78	-1	2.19382	160

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RNA PolII Peakzilla Peaks (polII_peakzilla) Track Description


	Description These tracks show the regions in the genome that are significantly enriched in RNA Polymerase II as determined by Peakzilla. ChIP-Seq reads from the two technical replicates of each biological replicate were merged prior to the Peakzilla analyses. References Bardet AF, Steinmann J, Bafna S, Knoblich JA, Zeitlinger J, Stark A. Identification of transcription factor binding sites from ChIP-seq data at high resolution. Bioinformatics. 2013 Nov 1;29(21):2705-13. Credits The ChIP-Seq data were produced by the Washington University Genome Technology Access Center under the run ID HiSeq 2871_6

Description