Schema for D. mel. cDNAs - cDNAs from D. melanogaster
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Database: dm3gene Primary Table: dmel_cdna Row Count: 7
field | example | SQL type | info |
bin | 585 | smallint(5) unsigned | range |
matches | 2194 | int(10) unsigned | range |
misMatches | 12 | int(10) unsigned | range |
repMatches | 0 | int(10) unsigned | range |
nCount | 0 | int(10) unsigned | range |
qNumInsert | 0 | int(10) unsigned | range |
qBaseInsert | 0 | int(10) unsigned | range |
tNumInsert | 4 | int(10) unsigned | range |
tBaseInsert | 789 | int(10) unsigned | range |
strand | - | char(2) | values |
qName | AY069466 | varchar(255) | values |
qSize | 2233 | int(10) unsigned | range |
qStart | 0 | int(10) unsigned | range |
qEnd | 2206 | int(10) unsigned | range |
tName | contig1 | varchar(255) | values |
tSize | 11000 | int(10) unsigned | range |
tStart | 439 | int(10) unsigned | range |
tEnd | 3434 | int(10) unsigned | range |
blockCount | 5 | int(10) unsigned | range |
blockSizes | 721,218,1123,110,34, | longblob | |
qStarts | 27,748,966,2089,2199, | longblob | |
tStarts | 439,1239,1582,2764,3400, | longblob | |
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 2194 | 12 | 0 | 0 | 0 | 0 | 4 | 789 | - | AY069466 | 2233 | 0 | 2206 | contig1 | 11000 | 439 | 3434 | 5 | 721,218,1123,110,34, | 27,748,966,2089,2199, | 439,1239,1582,2764,3400, |
585 | 3599 | 43 | 0 | 0 | 0 | 0 | 7 | 1394 | - | AY095530 | 3680 | 17 | 3659 | contig1 | 11000 | 439 | 5475 | 8 | 721,218,1123,110,407,716,173,174, | 21,742,960,2083,2193,2600,3316,3489, | 439,1239,1582,2764,3400,3866,4641,5301, |
585 | 3600 | 42 | 0 | 0 | 0 | 0 | 7 | 1394 | - | BT044140 | 3680 | 17 | 3659 | contig1 | 11000 | 439 | 5475 | 8 | 721,218,1123,110,407,716,173,174, | 21,742,960,2083,2193,2600,3316,3489, | 439,1239,1582,2764,3400,3866,4641,5301, |
585 | 2330 | 0 | 0 | 0 | 0 | 0 | 4 | 789 | - | BT150059 | 2347 | 0 | 2330 | contig1 | 11000 | 444 | 3563 | 5 | 716,218,1123,110,163, | 17,733,951,2074,2184, | 444,1239,1582,2764,3400, |
585 | 3641 | 0 | 0 | 0 | 0 | 0 | 2 | 122 | + | AF145687 | 3663 | 0 | 3641 | contig1 | 11000 | 5932 | 9695 | 3 | 87,757,2797, | 0,87,844, | 5932,6080,6898, |
585 | 3438 | 0 | 0 | 0 | 0 | 0 | 2 | 122 | + | FJ630149 | 3472 | 16 | 3454 | contig1 | 11000 | 5934 | 9494 | 3 | 85,757,2596, | 16,101,858, | 5934,6080,6898, |
585 | 848 | 4 | 0 | 0 | 0 | 0 | 2 | 130 | + | BT028774 | 885 | 0 | 852 | contig1 | 11000 | 9864 | 10846 | 3 | 33,579,240, | 0,33,612, | 9864,9970,10606, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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D. mel. cDNAs (dmel_cdna) Track Description
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Description
This track shows the alignments between Drosophila cDNAs in GenBank and the D. melanogaster genome.
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