Schema for Exon Junctions - RNA-Seq Exon Junctions

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Schema for Exon Junctions - RNA-Seq Exon Junctions

Database: dm3gene Primary Table: intron_junctions Row Count: 15

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	contig1	`varchar(255)`	values
`chromStart`	1136	`int(10) unsigned`	range
`chromEnd`	1277	`int(10) unsigned`	range
`name`	FBsf0000110034	`varchar(255)`	values
`score`	803	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	1136	`int(10) unsigned`	range
`thickEnd`	1277	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	2	`int(10) unsigned`	range
`blockSizes`	24,38	`longblob`
`chromStarts`	0,103	`longblob`

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts
585	contig1	1136	1277	FBsf0000110034	803	-	1136	1277	0	2	24,38	0,103
585	contig1	1422	1641	FBsf0000105610	109	-	1422	1641	0	2	35,59	0,160
585	contig1	3760	3893	FBsf0000147233	723	-	3760	3893	0	2	47,30	0,103
585	contig1	3764	3905	FBsf0000148660	838	-	3764	3905	0	2	43,39	0,102
585	contig1	4062	4267	FBsf0000135900	50	-	4062	4267	0	2	34,43	0,162
585	contig1	4153	4233	FBsf0000183902	71	-	4153	4233	0	2	11,9	0,71
585	contig1	4557	4658	FBsf0000148044	521	-	4557	4658	0	2	25,17	0,84
585	contig1	4774	5340	FBsf0000149024	1210	-	4774	5340	0	2	40,39	0,527
585	contig1	4803	5203	FBsf0000174668	23	-	4803	5203	0	2	11,9	0,391
585	contig1	5947	6129	FBsf0000124016	2129	+	5947	6129	0	2	72,49	0,133

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Exon Junctions (intron_junctions) Track Description


	Description This track shows the exon junctions identified by the modENCODE Drosophila Transcriptome group using the D. melanogaster RNA-Seq data (Daines et al.). References Daines et al. The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res. 2011 21(2): 315-324.