Schema for Pausing Factors ChIP-chip (S2 Cells) - Pausing Factors ChIP-chip in S2 Cells

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Schema for Pausing Factors ChIP-chip (S2 Cells) - Pausing Factors ChIP-chip in S2 Cells

Database: dm6 Primary Table: smoothed_DSIF_S2 Row Count: 1 Data last updated: 2022-10-21

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/pausing_ChIPc...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/pausing_ChIPchip/S2_DSIF_smoothed.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Pausing Factors ChIP-chip (S2 Cells) (pausing_ChIPchip) Track Description


	Description These tracks show the ChIP-chip enrichment profiles for DRB Sensitivity Inducing Factor (DSIF), Negative Elongation Factor (NELF), and Transcription Factor II A (TFIIA). The NimbleGen ChIP-chip datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE20471, and then analyzed using the Ringo package in Bioconductor. References Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell. 2010 Nov 12;143(4):540-51. Toedling J, Huber W. Analyzing ChIP-chip data using bioconductor. PLoS Comput Biol. 2008 Nov;4(11):e1000227.