Schema for Unique ChIP-chip Probes - Uniquely-Placed ChIP-chip Probes

Database: dm6 Primary Table: GPL6888_unique_probes Data last updated: 2018-03-22
Big Bed File: /gbdb/dm6/bbi/mappability/GPL6888_unique_probes.bb
Item Count: 1,839,000
Format description: Browser Extensible Data

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15727560	Start position in chromosome
`chromEnd`	15727614	End position in chromosome
`name`	CHR2LRS015727561	Name of item.

Sample Rows

chrom	chromStart	chromEnd	name
chr2L	15727560	15727614	CHR2LRS015727561
chr2L	15727624	15727681	CHR2LFS015727625
chr2L	15727688	15727742	CHR2LRS015727689
chr2L	15727755	15727805	CHR2LFS015727756
chr2L	15727819	15727873	CHR2LRS015727820
chr2L	15727883	15727939	CHR2LFS015727884
chr2L	15727947	15728000	CHR2LRS015727948
chr2L	15728011	15728064	CHR2LFS015728012
chr2L	15728075	15728135	CHR2LRS015728076
chr2L	15728139	15728202	CHR2LFS015728140

Unique ChIP-chip Probes (unique_ChIPchip_probes) Track Description


	Description These tracks show the locations of microarray probes that can be uniquely placed in the D. melanogaster (dm6) assembly. Each probe was mapped against the genome assembly using exonerate and only the alignments with 97% identity or above were kept. The uniqueness of the probes was determined by the `posToProbeAnno` function in the Ringo package in Bioconductor. References Toedling J, Huber W. Analyzing ChIP-chip data using bioconductor. PLoS Comput Biol. 2008 Nov;4(11):e1000227.

Description

References