Schema for ORGANIC Enrichment (S2 Cells) - ORGANIC Enrichment Profiles for S2 Cells (R5)

Database: dm6 Primary Table: GSE45672_Psq_peaks Row Count: 1,464 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	47733	`int(10) unsigned`	range
`chromEnd`	47752	`int(10) unsigned`	range
`name`	Psq_1_649.91	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	chr2L	47733	47752	Psq_1_649.91
585	chr2L	66861	66882	Psq_2_519.92
585	chr2L	85887	85906	Psq_3_519.92
585	chr2L	107882	107903	Psq_4_519.92
587	chr2L	293751	293770	Psq_5_493.93
587	chr2L	348103	348122	Psq_6_2469.64
587	chr2L	348145	348166	Psq_7_649.91
587	chr2L	355131	355150	Psq_8_2001.71
587	chr2L	355173	355194	Psq_9_909.87
588	chr2L	469154	469175	Psq_10_519.92

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

ORGANIC Enrichment (S2 Cells) (GSE45672_ORGANIC) Track Description


	Description These tracks show the regions that are enriched in GAGA Factor (GAF) and Pipsqueak (Psq) in Drosophila S2 cells based on the Occupied Regions Genomes from Affinity-purified Naturally Isolated Chromatin (ORGANIC) profiles. Only reads with an estimated fragment length of 50 bp or less (len25) were used to create the read coverage tracks. The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE45672. The peak calls for GAF and Psq were obtained from Supplemental File 1 of the manuscript by Kasinathan S and colleagues. Credits Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S. High-resolution mapping of transcription factor binding sites on native chromatin. Nat Methods. 2014 Feb;11(2):203-9.

Description