Schema for Inhibit Topoisomerases PolII ChIP-Seq - PolII ChIP-Seq After Inhibition of Topoisomerases

Database: dm6 Primary Table: GSE47795_PolII_Camp_idr Row Count: 17,877 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	12987	`int(10) unsigned`	range
`chromEnd`	13381	`int(10) unsigned`	range
`name`	.	`varchar(255)`	values
`score`	755	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.47844	`float`	range
`pValue`	14.1197	`float`	range
`qValue`	11.7642	`float`	range
`peak`	110	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	12987	13381	.	755	.	2.47844	14.1197	11.7642	110
585	chr2L	45511	47451	.	1000	.	1.47986	2.38136	1.31644	252
585	chr2L	45511	47451	.	1000	.	2.17587	7.96023	6.02264	1852
585	chr2L	45511	47451	.	1000	.	1.63775	3.52916	2.22507	64
585	chr2L	45511	47451	.	1000	.	2.6672	13.6434	11.3102	1117
585	chr2L	45511	47451	.	1000	.	2.71181	14.6573	12.278	654
585	chr2L	45511	47451	.	1000	.	3.22872	21.4736	18.8629	1359
585	chr2L	45511	47451	.	1000	.	4.70269	47.2828	44.2565	1560
585	chr2L	45511	47451	.	1000	.	2.65006	13.5014	11.1774	957
585	chr2L	52655	53484	.	1000	.	2.07059	6.90585	5.08356	64

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Inhibit Topoisomerases PolII ChIP-Seq (GSE47795_polII_chipseq) Track Description


	Description These tracks show the regions in the D. melanogaster genome that are significantly enriched in RNA Polymerase II (PolII) in S2 cells as determined by MACS2. The samples were treated with Camptothecin to inhibit topoisomerase I (Top1), and treated with ICRF-193 to inhibit topoisomerase II (Top2). The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. The PolII ChIP-Seq datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE47795. References Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol. 2014 Jan;21(1):88-94. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17.

Description