Schema for Inhibit Topoisomerases PolII ChIP-Seq - PolII ChIP-Seq After Inhibition of Topoisomerases

Database: dm6 Primary Table: GSE47795_PolII_Camp_macs Row Count: 37,445 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	6575	`int(10) unsigned`	range
`chromEnd`	6796	`int(10) unsigned`	range
`name`	GSE47795_PolII_Camp_macs_pe...	`varchar(255)`	values
`score`	31	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	1.82493	`float`	range
`pValue`	4.69735	`float`	range
`qValue`	3.18143	`float`	range
`peak`	147	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	6575	6796	GSE47795_PolII_Camp_macs_peak_1	31	.	1.82493	4.69735	3.18143	147
585	chr2L	7276	7662	GSE47795_PolII_Camp_macs_peak_2	31	.	1.82493	4.69735	3.18143	104
585	chr2L	11896	12161	GSE47795_PolII_Camp_macs_peak_3	26	.	1.63799	4.05993	2.65828	55
585	chr2L	13023	13183	GSE47795_PolII_Camp_macs_peak_4	117	.	2.47844	14.1197	11.7642	74
585	chr2L	14536	14689	GSE47795_PolII_Camp_macs_peak_5	58	.	2.0587	7.75305	5.84001	86
585	chr2L	15070	15305	GSE47795_PolII_Camp_macs_peak_6	54	.	2.0393	7.32297	5.45448	172
585	chr2L	45990	47439	GSE47795_PolII_Camp_macs_peak_7a	122	.	2.71181	14.6573	12.278	175
585	chr2L	45990	47439	GSE47795_PolII_Camp_macs_peak_7b	111	.	2.65006	13.5014	11.1774	478
585	chr2L	45990	47439	GSE47795_PolII_Camp_macs_peak_7c	100	.	2.56192	12.3264	10.0611	636
585	chr2L	45990	47439	GSE47795_PolII_Camp_macs_peak_7d	188	.	3.22872	21.4736	18.8629	880

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Inhibit Topoisomerases PolII ChIP-Seq (GSE47795_polII_chipseq) Track Description


	Description These tracks show the regions in the D. melanogaster genome that are significantly enriched in RNA Polymerase II (PolII) in S2 cells as determined by MACS2. The samples were treated with Camptothecin to inhibit topoisomerase I (Top1), and treated with ICRF-193 to inhibit topoisomerase II (Top2). The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. The PolII ChIP-Seq datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE47795. References Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol. 2014 Jan;21(1):88-94. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17.

Description