Schema for Inhibit Topoisomerases PolII ChIP-Seq - PolII ChIP-Seq After Inhibition of Topoisomerases

Database: dm6 Primary Table: GSE47795_PolII_Control_macs Row Count: 7,075 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	14571	`int(10) unsigned`	range
`chromEnd`	14718	`int(10) unsigned`	range
`name`	GSE47795_PolII_Control_macs...	`varchar(255)`	values
`score`	32	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.2857	`float`	range
`pValue`	5.56457	`float`	range
`qValue`	3.24683	`float`	range
`peak`	61	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	14571	14718	GSE47795_PolII_Control_macs_peak_1	32	.	2.2857	5.56457	3.24683	61
585	chr2L	45990	46231	GSE47795_PolII_Control_macs_peak_2a	31	.	2.34655	5.45055	3.1559	49
585	chr2L	45990	46231	GSE47795_PolII_Control_macs_peak_2b	53	.	2.78653	8.17649	5.33925	214
585	chr2L	46782	47446	GSE47795_PolII_Control_macs_peak_3a	71	.	3.07985	10.2173	7.10232	97
585	chr2L	46782	47446	GSE47795_PolII_Control_macs_peak_3b	96	.	3.4465	12.9919	9.63086	312
585	chr2L	52657	53331	GSE47795_PolII_Control_macs_peak_4a	80	.	3.22651	11.2986	8.07595	255
585	chr2L	52657	53331	GSE47795_PolII_Control_macs_peak_4b	85	.	3.29984	11.8538	8.58279	467
585	chr2L	62489	62656	GSE47795_PolII_Control_macs_peak_5	20	.	1.98658	3.90194	2.03961	22
585	chr2L	68491	68673	GSE47795_PolII_Control_macs_peak_6	33	.	2.29804	5.73828	3.38497	98
585	chr2L	76425	76588	GSE47795_PolII_Control_macs_peak_7	27	.	2.08919	4.90015	2.76102	40

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Inhibit Topoisomerases PolII ChIP-Seq (GSE47795_polII_chipseq) Track Description


	Description These tracks show the regions in the D. melanogaster genome that are significantly enriched in RNA Polymerase II (PolII) in S2 cells as determined by MACS2. The samples were treated with Camptothecin to inhibit topoisomerase I (Top1), and treated with ICRF-193 to inhibit topoisomerase II (Top2). The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. The PolII ChIP-Seq datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE47795. References Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol. 2014 Jan;21(1):88-94. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17.

Description