Schema for Inhibit Topoisomerases PolII ChIP-Seq - PolII ChIP-Seq After Inhibition of Topoisomerases

Database: dm6 Primary Table: GSE47795_PolII_ICRF_idr Row Count: 15,564 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	14013	`int(10) unsigned`	range
`chromEnd`	16025	`int(10) unsigned`	range
`name`	.	`varchar(255)`	values
`score`	673	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	1.30534	`float`	range
`pValue`	1.48385	`float`	range
`qValue`	0.63808	`float`	range
`peak`	43	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	14013	16025	.	673	.	1.30534	1.48385	0.63808	43
585	chr2L	14013	16025	.	673	.	1.33616	1.57037	0.69825	1799
585	chr2L	14013	16025	.	673	.	1.49916	2.55288	1.44133	1569
585	chr2L	14013	16025	.	673	.	1.54631	2.89388	1.70998	1427
585	chr2L	14013	16025	.	673	.	1.55264	3.01	1.79984	439
585	chr2L	14013	16025	.	673	.	1.72466	4.35532	2.88669	974
585	chr2L	14013	16025	.	673	.	1.98464	6.8114	4.97614	1239
585	chr2L	14013	16025	.	673	.	2.61077	14.8364	12.3712	592
585	chr2L	45940	47474	.	1000	.	2.28297	8.97167	6.90038	520
585	chr2L	45940	47474	.	1000	.	3.0565	19.1125	16.4691	244

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Inhibit Topoisomerases PolII ChIP-Seq (GSE47795_polII_chipseq) Track Description


	Description These tracks show the regions in the D. melanogaster genome that are significantly enriched in RNA Polymerase II (PolII) in S2 cells as determined by MACS2. The samples were treated with Camptothecin to inhibit topoisomerase I (Top1), and treated with ICRF-193 to inhibit topoisomerase II (Top2). The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. The PolII ChIP-Seq datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE47795. References Teves SS, Henikoff S. Transcription-generated torsional stress destabilizes nucleosomes. Nat Struct Mol Biol. 2014 Jan;21(1):88-94. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17.

Description